Iodine in PDB 4nw8: Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Protein crystallography data
The structure of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V), PDB code: 4nw8
was solved by
R.K.Spencer,
H.Li,
J.S.Nowick,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.74 /
2.02
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.680,
68.680,
93.840,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.5 /
23.7
|
Other elements in 4nw8:
The structure of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) also contains other interesting chemical elements:
Iodine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iodine atom in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
(pdb code 4nw8). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 12 binding sites of Iodine where determined in the
Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V), PDB code: 4nw8:
Jump to Iodine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iodine binding site 1 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 1 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:I4
b:44.0
occ:1.00
|
I
|
A:PHI4
|
0.0
|
44.0
|
1.0
|
CZ
|
A:PHI4
|
2.1
|
37.4
|
1.0
|
CE1
|
A:PHI4
|
3.0
|
34.6
|
1.0
|
HE1
|
A:PHI4
|
3.1
|
41.5
|
1.0
|
HG11
|
K:VAL16
|
3.1
|
34.0
|
1.0
|
CE2
|
A:PHI4
|
3.1
|
33.3
|
1.0
|
HE2
|
A:PHI4
|
3.2
|
39.9
|
1.0
|
HD12
|
A:LEU2
|
3.2
|
33.7
|
1.0
|
HD13
|
A:LEU2
|
3.3
|
33.7
|
1.0
|
HG12
|
K:VAL16
|
3.6
|
34.0
|
1.0
|
CD1
|
A:LEU2
|
3.7
|
28.1
|
1.0
|
CG1
|
K:VAL16
|
3.8
|
28.3
|
1.0
|
I
|
K:PHI4
|
4.1
|
39.0
|
1.0
|
HG13
|
K:VAL16
|
4.1
|
34.0
|
1.0
|
HD11
|
A:LEU2
|
4.1
|
33.7
|
1.0
|
CD1
|
A:PHI4
|
4.3
|
31.6
|
1.0
|
HG11
|
A:VAL16
|
4.3
|
31.4
|
1.0
|
HB2
|
A:LEU2
|
4.4
|
26.5
|
1.0
|
CD2
|
A:PHI4
|
4.4
|
29.9
|
1.0
|
HD13
|
C:LEU14
|
4.5
|
42.5
|
1.0
|
HB
|
A:VAL16
|
4.6
|
28.8
|
1.0
|
HD11
|
C:LEU14
|
4.6
|
42.5
|
1.0
|
HG21
|
A:VAL16
|
4.7
|
29.8
|
1.0
|
HB3
|
A:LEU2
|
4.8
|
26.5
|
1.0
|
CG
|
A:PHI4
|
4.9
|
28.0
|
1.0
|
CB
|
A:LEU2
|
4.9
|
22.1
|
1.0
|
CG
|
A:LEU2
|
4.9
|
25.2
|
1.0
|
CD1
|
C:LEU14
|
4.9
|
35.4
|
1.0
|
|
Iodine binding site 2 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 2 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:I4
b:49.5
occ:1.00
|
I
|
B:PHI4
|
0.0
|
49.5
|
1.0
|
CZ
|
B:PHI4
|
2.1
|
43.0
|
1.0
|
CE1
|
B:PHI4
|
3.0
|
40.5
|
1.0
|
HD12
|
B:LEU2
|
3.0
|
53.9
|
1.0
|
HG11
|
D:VAL16
|
3.1
|
41.8
|
1.0
|
HE1
|
B:PHI4
|
3.1
|
48.6
|
1.0
|
CE2
|
B:PHI4
|
3.1
|
37.8
|
1.0
|
HE2
|
B:PHI4
|
3.2
|
45.4
|
1.0
|
HG12
|
D:VAL16
|
3.6
|
41.8
|
1.0
|
CG1
|
D:VAL16
|
3.8
|
34.8
|
1.0
|
HD13
|
B:LEU2
|
3.8
|
53.9
|
1.0
|
CD1
|
B:LEU2
|
3.8
|
44.9
|
1.0
|
HD13
|
A:LEU14
|
4.0
|
35.1
|
1.0
|
I
|
D:PHI4
|
4.1
|
47.9
|
1.0
|
HD11
|
A:LEU14
|
4.1
|
35.1
|
1.0
|
HB2
|
B:LEU2
|
4.2
|
42.2
|
1.0
|
HG13
|
D:VAL16
|
4.2
|
41.8
|
1.0
|
HG11
|
B:VAL16
|
4.2
|
42.0
|
1.0
|
CD1
|
B:PHI4
|
4.3
|
37.1
|
1.0
|
HD11
|
B:LEU2
|
4.3
|
53.9
|
1.0
|
CD2
|
B:PHI4
|
4.4
|
34.1
|
1.0
|
HB
|
B:VAL16
|
4.4
|
38.5
|
1.0
|
CD1
|
A:LEU14
|
4.5
|
29.2
|
1.0
|
HG21
|
B:VAL16
|
4.6
|
38.1
|
1.0
|
HD12
|
A:LEU14
|
4.7
|
35.1
|
1.0
|
HD12
|
D:LEU2
|
4.8
|
44.4
|
1.0
|
HB3
|
B:LEU2
|
4.9
|
42.2
|
1.0
|
CB
|
B:LEU2
|
4.9
|
35.2
|
1.0
|
HB
|
D:VAL16
|
4.9
|
38.6
|
1.0
|
CG
|
B:PHI4
|
4.9
|
32.7
|
1.0
|
CG
|
B:LEU2
|
4.9
|
39.4
|
1.0
|
CG1
|
B:VAL16
|
5.0
|
35.0
|
1.0
|
CB
|
D:VAL16
|
5.0
|
32.2
|
1.0
|
|
Iodine binding site 3 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 3 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:I4
b:59.6
occ:1.00
|
I
|
C:PHI4
|
0.0
|
59.6
|
1.0
|
CZ
|
C:PHI4
|
2.1
|
52.9
|
1.0
|
HD12
|
C:LEU2
|
2.9
|
53.3
|
1.0
|
CE1
|
C:PHI4
|
3.0
|
48.5
|
1.0
|
HE1
|
C:PHI4
|
3.1
|
58.2
|
1.0
|
CE2
|
C:PHI4
|
3.1
|
47.9
|
1.0
|
HG11
|
G:VAL16
|
3.2
|
37.8
|
1.0
|
HE2
|
C:PHI4
|
3.2
|
57.4
|
1.0
|
HD13
|
C:LEU2
|
3.2
|
53.3
|
1.0
|
HG12
|
G:VAL16
|
3.4
|
37.8
|
1.0
|
CD1
|
C:LEU2
|
3.5
|
44.4
|
1.0
|
CG1
|
G:VAL16
|
3.7
|
31.5
|
1.0
|
I
|
G:PHI4
|
3.9
|
48.8
|
1.0
|
HD11
|
C:LEU2
|
3.9
|
53.3
|
1.0
|
HD13
|
B:LEU14
|
4.2
|
43.0
|
1.0
|
HD11
|
B:LEU14
|
4.2
|
43.0
|
1.0
|
HB2
|
C:LEU2
|
4.2
|
45.7
|
1.0
|
HG13
|
G:VAL16
|
4.3
|
37.8
|
1.0
|
CD1
|
C:PHI4
|
4.3
|
43.5
|
1.0
|
CD2
|
C:PHI4
|
4.4
|
41.9
|
1.0
|
HB
|
C:VAL16
|
4.5
|
48.4
|
1.0
|
HG11
|
C:VAL16
|
4.5
|
54.0
|
1.0
|
CD1
|
B:LEU14
|
4.6
|
35.8
|
1.0
|
HG21
|
C:VAL16
|
4.7
|
46.0
|
1.0
|
HB
|
G:VAL16
|
4.7
|
33.6
|
1.0
|
HB3
|
C:LEU2
|
4.7
|
45.7
|
1.0
|
CG
|
C:LEU2
|
4.8
|
43.6
|
1.0
|
CB
|
C:LEU2
|
4.8
|
38.1
|
1.0
|
HD12
|
B:LEU14
|
4.8
|
43.0
|
1.0
|
HD12
|
G:LEU2
|
4.9
|
38.5
|
1.0
|
CG
|
C:PHI4
|
4.9
|
37.9
|
1.0
|
CB
|
G:VAL16
|
4.9
|
28.0
|
1.0
|
|
Iodine binding site 4 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 4 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 4 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:I4
b:47.9
occ:1.00
|
I
|
D:PHI4
|
0.0
|
47.9
|
1.0
|
CZ
|
D:PHI4
|
2.1
|
41.5
|
1.0
|
CE1
|
D:PHI4
|
3.0
|
38.9
|
1.0
|
HE1
|
D:PHI4
|
3.1
|
46.6
|
1.0
|
CE2
|
D:PHI4
|
3.1
|
37.2
|
1.0
|
HD12
|
D:LEU2
|
3.1
|
44.4
|
1.0
|
HE2
|
D:PHI4
|
3.2
|
44.6
|
1.0
|
HG11
|
B:VAL16
|
3.2
|
42.0
|
1.0
|
HD13
|
D:LEU2
|
3.6
|
44.4
|
1.0
|
HG12
|
B:VAL16
|
3.7
|
42.0
|
1.0
|
CD1
|
D:LEU2
|
3.8
|
37.0
|
1.0
|
HD13
|
E:LEU14
|
3.9
|
40.6
|
1.0
|
CG1
|
B:VAL16
|
3.9
|
35.0
|
1.0
|
HD11
|
E:LEU14
|
4.0
|
40.6
|
1.0
|
I
|
B:PHI4
|
4.1
|
49.5
|
1.0
|
HB2
|
D:LEU2
|
4.3
|
36.0
|
1.0
|
HD11
|
D:LEU2
|
4.3
|
44.4
|
1.0
|
HG13
|
B:VAL16
|
4.3
|
42.0
|
1.0
|
CD1
|
E:LEU14
|
4.3
|
33.8
|
1.0
|
HG11
|
D:VAL16
|
4.3
|
41.8
|
1.0
|
CD1
|
D:PHI4
|
4.3
|
35.8
|
1.0
|
CD2
|
D:PHI4
|
4.4
|
34.0
|
1.0
|
HD12
|
E:LEU14
|
4.4
|
40.6
|
1.0
|
HB
|
D:VAL16
|
4.5
|
38.6
|
1.0
|
HG21
|
D:VAL16
|
4.5
|
38.2
|
1.0
|
CG
|
D:PHI4
|
4.9
|
32.2
|
1.0
|
HB3
|
D:LEU2
|
4.9
|
36.0
|
1.0
|
CB
|
D:LEU2
|
4.9
|
30.0
|
1.0
|
CG
|
D:LEU2
|
5.0
|
34.0
|
1.0
|
|
Iodine binding site 5 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 5 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 5 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:I4
b:42.6
occ:1.00
|
I
|
E:PHI4
|
0.0
|
42.6
|
1.0
|
CZ
|
E:PHI4
|
2.1
|
38.5
|
1.0
|
CE1
|
E:PHI4
|
3.0
|
35.5
|
1.0
|
HD12
|
E:LEU2
|
3.1
|
34.9
|
1.0
|
HE1
|
E:PHI4
|
3.1
|
42.7
|
1.0
|
CE2
|
E:PHI4
|
3.1
|
36.0
|
1.0
|
HE2
|
E:PHI4
|
3.2
|
43.2
|
1.0
|
HG12
|
I:VAL16
|
3.3
|
37.3
|
1.0
|
HG13
|
I:VAL16
|
3.7
|
37.3
|
1.0
|
HD13
|
E:LEU2
|
3.9
|
34.9
|
1.0
|
CD1
|
E:LEU2
|
3.9
|
29.1
|
1.0
|
I
|
I:PHI4
|
3.9
|
45.1
|
1.0
|
CG1
|
I:VAL16
|
4.0
|
31.1
|
1.0
|
HD12
|
I:LEU2
|
4.1
|
36.3
|
1.0
|
HG11
|
E:VAL16
|
4.2
|
37.8
|
1.0
|
HB
|
E:VAL16
|
4.2
|
34.2
|
1.0
|
HB2
|
E:LEU2
|
4.2
|
29.0
|
1.0
|
CD1
|
E:PHI4
|
4.3
|
32.8
|
1.0
|
HD13
|
F:LEU14
|
4.4
|
41.4
|
1.0
|
HD11
|
E:LEU2
|
4.4
|
34.9
|
1.0
|
CD2
|
E:PHI4
|
4.4
|
32.6
|
1.0
|
HG21
|
E:VAL16
|
4.4
|
34.6
|
1.0
|
HG11
|
I:VAL16
|
4.4
|
37.3
|
1.0
|
HD11
|
F:LEU14
|
4.4
|
41.4
|
1.0
|
CD1
|
F:LEU14
|
4.8
|
34.5
|
1.0
|
CB
|
E:VAL16
|
4.9
|
28.5
|
1.0
|
CG1
|
E:VAL16
|
4.9
|
31.5
|
1.0
|
CB
|
E:LEU2
|
4.9
|
24.2
|
1.0
|
CG
|
E:PHI4
|
4.9
|
29.6
|
1.0
|
HB3
|
E:LEU2
|
4.9
|
29.0
|
1.0
|
HD12
|
F:LEU14
|
4.9
|
41.4
|
1.0
|
CG
|
E:LEU2
|
5.0
|
26.9
|
1.0
|
HE1
|
I:PHI4
|
5.0
|
41.2
|
1.0
|
|
Iodine binding site 6 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 6 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 6 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:I4
b:52.2
occ:1.00
|
I
|
F:PHI4
|
0.0
|
52.2
|
1.0
|
CZ
|
F:PHI4
|
2.1
|
45.1
|
1.0
|
CE1
|
F:PHI4
|
3.0
|
40.6
|
1.0
|
HE1
|
F:PHI4
|
3.1
|
48.7
|
1.0
|
HG11
|
L:VAL16
|
3.1
|
43.4
|
1.0
|
CE2
|
F:PHI4
|
3.1
|
40.5
|
1.0
|
HD23
|
F:LEU2
|
3.2
|
44.1
|
1.0
|
HE2
|
F:PHI4
|
3.2
|
48.6
|
1.0
|
HD22
|
F:LEU2
|
3.3
|
44.1
|
1.0
|
HG12
|
L:VAL16
|
3.6
|
43.4
|
1.0
|
CD2
|
F:LEU2
|
3.7
|
36.8
|
1.0
|
CG1
|
L:VAL16
|
3.8
|
36.2
|
1.0
|
I
|
L:PHI4
|
3.9
|
46.6
|
1.0
|
HB2
|
F:LEU2
|
4.0
|
36.8
|
1.0
|
HG13
|
L:VAL16
|
4.2
|
43.4
|
1.0
|
HG11
|
F:VAL16
|
4.2
|
42.3
|
1.0
|
HB
|
F:VAL16
|
4.3
|
38.7
|
1.0
|
HB3
|
F:LEU2
|
4.3
|
36.8
|
1.0
|
HD21
|
F:LEU2
|
4.3
|
44.1
|
1.0
|
CD1
|
F:PHI4
|
4.3
|
35.5
|
1.0
|
HD13
|
D:LEU14
|
4.3
|
34.7
|
1.0
|
CD2
|
F:PHI4
|
4.4
|
35.6
|
1.0
|
HD11
|
D:LEU14
|
4.4
|
34.7
|
1.0
|
HG21
|
F:VAL16
|
4.5
|
39.5
|
1.0
|
CB
|
F:LEU2
|
4.5
|
30.6
|
1.0
|
CG
|
F:LEU2
|
4.8
|
35.7
|
1.0
|
CD1
|
D:LEU14
|
4.8
|
28.9
|
1.0
|
HD12
|
L:LEU2
|
4.9
|
39.1
|
1.0
|
HB
|
L:VAL16
|
4.9
|
39.0
|
1.0
|
CG
|
F:PHI4
|
4.9
|
32.0
|
1.0
|
CG1
|
F:VAL16
|
4.9
|
35.3
|
1.0
|
CB
|
F:VAL16
|
4.9
|
32.2
|
1.0
|
HD12
|
D:LEU14
|
4.9
|
34.7
|
1.0
|
CB
|
L:VAL16
|
5.0
|
32.5
|
1.0
|
|
Iodine binding site 7 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 7 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 7 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:I4
b:48.8
occ:1.00
|
I
|
G:PHI4
|
0.0
|
48.8
|
1.0
|
CZ
|
G:PHI4
|
2.1
|
40.6
|
1.0
|
HD12
|
G:LEU2
|
3.0
|
38.5
|
1.0
|
CE1
|
G:PHI4
|
3.0
|
36.1
|
1.0
|
HE1
|
G:PHI4
|
3.1
|
43.3
|
1.0
|
CE2
|
G:PHI4
|
3.1
|
34.5
|
1.0
|
HE2
|
G:PHI4
|
3.2
|
41.4
|
1.0
|
HG11
|
C:VAL16
|
3.2
|
54.0
|
1.0
|
HG12
|
C:VAL16
|
3.8
|
54.0
|
1.0
|
CD1
|
G:LEU2
|
3.8
|
32.1
|
1.0
|
HD13
|
G:LEU2
|
3.9
|
38.5
|
1.0
|
I
|
C:PHI4
|
3.9
|
59.6
|
1.0
|
CG1
|
C:VAL16
|
3.9
|
45.0
|
1.0
|
HB2
|
G:LEU2
|
4.1
|
30.0
|
1.0
|
HG11
|
G:VAL16
|
4.2
|
37.8
|
1.0
|
HB
|
G:VAL16
|
4.2
|
33.6
|
1.0
|
HD13
|
H:LEU14
|
4.3
|
28.7
|
1.0
|
CD1
|
G:PHI4
|
4.3
|
30.8
|
1.0
|
HD11
|
G:LEU2
|
4.3
|
38.5
|
1.0
|
HD11
|
H:LEU14
|
4.4
|
28.7
|
1.0
|
CD2
|
G:PHI4
|
4.4
|
29.6
|
1.0
|
HD12
|
C:LEU2
|
4.5
|
53.3
|
1.0
|
HG13
|
C:VAL16
|
4.5
|
54.0
|
1.0
|
HG21
|
G:VAL16
|
4.6
|
34.5
|
1.0
|
CD1
|
H:LEU14
|
4.7
|
23.9
|
1.0
|
CB
|
G:LEU2
|
4.8
|
25.0
|
1.0
|
HB
|
C:VAL16
|
4.8
|
48.4
|
1.0
|
HB3
|
G:LEU2
|
4.8
|
30.0
|
1.0
|
HD12
|
H:LEU14
|
4.8
|
28.7
|
1.0
|
CG1
|
G:VAL16
|
4.9
|
31.5
|
1.0
|
CG
|
G:LEU2
|
4.9
|
29.1
|
1.0
|
CG
|
G:PHI4
|
4.9
|
26.9
|
1.0
|
CB
|
G:VAL16
|
4.9
|
28.0
|
1.0
|
HG12
|
G:VAL16
|
5.0
|
37.8
|
1.0
|
CB
|
C:VAL16
|
5.0
|
40.3
|
1.0
|
|
Iodine binding site 8 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 8 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 8 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:I4
b:42.1
occ:1.00
|
I
|
H:PHI4
|
0.0
|
42.1
|
1.0
|
CZ
|
H:PHI4
|
2.1
|
33.9
|
1.0
|
CE1
|
H:PHI4
|
3.0
|
29.6
|
1.0
|
HE1
|
H:PHI4
|
3.1
|
35.5
|
1.0
|
HD12
|
H:LEU2
|
3.1
|
30.8
|
1.0
|
CE2
|
H:PHI4
|
3.1
|
29.3
|
1.0
|
HE2
|
H:PHI4
|
3.2
|
35.2
|
1.0
|
HG11
|
J:VAL16
|
3.2
|
36.0
|
1.0
|
HG12
|
J:VAL16
|
3.5
|
36.0
|
1.0
|
HD13
|
H:LEU2
|
3.6
|
30.8
|
1.0
|
CD1
|
H:LEU2
|
3.7
|
25.7
|
1.0
|
CG1
|
J:VAL16
|
3.8
|
30.0
|
1.0
|
HD13
|
I:LEU14
|
3.9
|
26.5
|
1.0
|
I
|
J:PHI4
|
4.1
|
42.5
|
1.0
|
HG13
|
J:VAL16
|
4.2
|
36.0
|
1.0
|
HD11
|
H:LEU2
|
4.2
|
30.8
|
1.0
|
HD11
|
I:LEU14
|
4.3
|
26.5
|
1.0
|
CD1
|
H:PHI4
|
4.3
|
25.8
|
1.0
|
HB2
|
H:LEU2
|
4.3
|
24.5
|
1.0
|
CD2
|
H:PHI4
|
4.4
|
25.3
|
1.0
|
CD1
|
I:LEU14
|
4.4
|
22.1
|
1.0
|
HD12
|
I:LEU14
|
4.6
|
26.5
|
1.0
|
HG11
|
H:VAL16
|
4.6
|
30.2
|
1.0
|
HB
|
H:VAL16
|
4.7
|
26.8
|
1.0
|
HG21
|
H:VAL16
|
4.7
|
27.4
|
1.0
|
HB3
|
H:LEU2
|
4.8
|
24.5
|
1.0
|
CG
|
H:PHI4
|
4.9
|
22.9
|
1.0
|
O
|
H:HOH116
|
4.9
|
48.0
|
1.0
|
CB
|
H:LEU2
|
4.9
|
20.4
|
1.0
|
CG
|
H:LEU2
|
4.9
|
24.5
|
1.0
|
|
Iodine binding site 9 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 9 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 9 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:I4
b:45.1
occ:1.00
|
I
|
I:PHI4
|
0.0
|
45.1
|
1.0
|
CZ
|
I:PHI4
|
2.1
|
37.6
|
1.0
|
CE1
|
I:PHI4
|
3.0
|
34.3
|
1.0
|
HE1
|
I:PHI4
|
3.1
|
41.2
|
1.0
|
HD12
|
I:LEU2
|
3.1
|
36.3
|
1.0
|
HG11
|
E:VAL16
|
3.1
|
37.8
|
1.0
|
CE2
|
I:PHI4
|
3.1
|
33.6
|
1.0
|
HE2
|
I:PHI4
|
3.2
|
40.3
|
1.0
|
HD13
|
I:LEU2
|
3.2
|
36.3
|
1.0
|
CD1
|
I:LEU2
|
3.6
|
30.3
|
1.0
|
HG12
|
E:VAL16
|
3.7
|
37.8
|
1.0
|
CG1
|
E:VAL16
|
3.8
|
31.5
|
1.0
|
I
|
E:PHI4
|
3.9
|
42.6
|
1.0
|
HD11
|
I:LEU2
|
4.0
|
36.3
|
1.0
|
HD13
|
G:LEU14
|
4.1
|
28.0
|
1.0
|
HG13
|
E:VAL16
|
4.3
|
37.8
|
1.0
|
HB2
|
I:LEU2
|
4.3
|
28.0
|
1.0
|
CD1
|
I:PHI4
|
4.3
|
30.6
|
1.0
|
HD11
|
G:LEU14
|
4.3
|
28.0
|
1.0
|
CD2
|
I:PHI4
|
4.4
|
30.1
|
1.0
|
HG12
|
I:VAL16
|
4.4
|
37.3
|
1.0
|
CD1
|
G:LEU14
|
4.6
|
23.3
|
1.0
|
HD12
|
G:LEU14
|
4.6
|
28.0
|
1.0
|
HB
|
I:VAL16
|
4.7
|
33.6
|
1.0
|
HB3
|
I:LEU2
|
4.7
|
28.0
|
1.0
|
CG
|
I:LEU2
|
4.8
|
27.8
|
1.0
|
CB
|
I:LEU2
|
4.8
|
23.4
|
1.0
|
HB
|
E:VAL16
|
4.9
|
34.2
|
1.0
|
CG
|
I:PHI4
|
4.9
|
26.4
|
1.0
|
CB
|
E:VAL16
|
5.0
|
28.5
|
1.0
|
|
Iodine binding site 10 out
of 12 in 4nw8
Go back to
Iodine Binding Sites List in 4nw8
Iodine binding site 10 out
of 12 in the Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V)
Mono view
Stereo pair view
|
A full contact list of Iodine with other atoms in the I binding
site number 10 of Crystal Structure of Macrocycles Containing ABETA17-23 (Lv(Phi)(Mea) Aed) and ABETA30-36 (Aiigl(Orn)V) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:I4
b:42.5
occ:1.00
|
I
|
J:PHI4
|
0.0
|
42.5
|
1.0
|
CZ
|
J:PHI4
|
2.1
|
37.0
|
1.0
|
CE1
|
J:PHI4
|
3.0
|
34.6
|
1.0
|
HE1
|
J:PHI4
|
3.1
|
41.5
|
1.0
|
HD12
|
J:LEU2
|
3.1
|
34.8
|
1.0
|
CE2
|
J:PHI4
|
3.1
|
32.7
|
1.0
|
HE2
|
J:PHI4
|
3.2
|
39.2
|
1.0
|
HG11
|
H:VAL16
|
3.2
|
30.2
|
1.0
|
HG12
|
H:VAL16
|
3.7
|
30.2
|
1.0
|
CG1
|
H:VAL16
|
3.9
|
25.2
|
1.0
|
HG11
|
J:VAL16
|
4.0
|
36.0
|
1.0
|
CD1
|
J:LEU2
|
4.0
|
29.0
|
1.0
|
HB2
|
J:LEU2
|
4.1
|
27.8
|
1.0
|
HD13
|
K:LEU14
|
4.1
|
27.7
|
1.0
|
I
|
H:PHI4
|
4.1
|
42.1
|
1.0
|
HD13
|
J:LEU2
|
4.1
|
34.8
|
1.0
|
HB
|
J:VAL16
|
4.2
|
32.5
|
1.0
|
CD1
|
J:PHI4
|
4.3
|
30.9
|
1.0
|
CD2
|
J:PHI4
|
4.4
|
29.5
|
1.0
|
HG13
|
H:VAL16
|
4.4
|
30.2
|
1.0
|
HD11
|
K:LEU14
|
4.5
|
27.7
|
1.0
|
HD11
|
J:LEU2
|
4.5
|
34.8
|
1.0
|
HD12
|
H:LEU2
|
4.5
|
30.8
|
1.0
|
HG21
|
J:VAL16
|
4.6
|
34.8
|
1.0
|
CG1
|
J:VAL16
|
4.7
|
30.0
|
1.0
|
CD1
|
K:LEU14
|
4.7
|
23.1
|
1.0
|
HG12
|
J:VAL16
|
4.7
|
36.0
|
1.0
|
CB
|
J:LEU2
|
4.8
|
23.1
|
1.0
|
HB
|
H:VAL16
|
4.8
|
26.8
|
1.0
|
CB
|
J:VAL16
|
4.8
|
27.1
|
1.0
|
CG
|
J:PHI4
|
4.9
|
27.4
|
1.0
|
HB3
|
J:LEU2
|
4.9
|
27.8
|
1.0
|
CG
|
J:LEU2
|
4.9
|
26.6
|
1.0
|
|
Reference:
R.K.Spencer,
H.Li,
J.S.Nowick.
X-Ray Crystallographic Structures of Trimers and Higher-Order Oligomeric Assemblies of A Peptide Derived From A Beta (17-36). J.Am.Chem.Soc. V. 136 5595 2014.
ISSN: ISSN 0002-7863
PubMed: 24669800
DOI: 10.1021/JA5017409
Page generated: Sun Aug 11 18:55:31 2024
|