Atomistry » Iodine » PDB 4n6d-4p4z » 4o8z
Atomistry »
  Iodine »
    PDB 4n6d-4p4z »
      4o8z »

Iodine in PDB 4o8z: Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone

Protein crystallography data

The structure of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone, PDB code: 4o8z was solved by B.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.73 / 2.00
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 116.317, 116.317, 45.655, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 20.4

Other elements in 4o8z:

The structure of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone (pdb code 4o8z). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone, PDB code: 4o8z:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 4o8z

Go back to Iodine Binding Sites List in 4o8z
Iodine binding site 1 out of 2 in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:0.1
occ:0.50
IBD A:BBI402 0.0 0.1 0.5
CBC A:BBI402 2.1 0.4 0.5
CBE A:BBI402 2.9 0.8 0.5
CAT A:BBI402 3.0 0.0 0.5
OAU A:BBI402 3.2 0.8 0.5
CAP A:BBI402 4.3 0.7 0.5
CAC A:BBI402 4.3 99.0 1.0
CAR A:BBI402 4.3 0.1 0.5
CAB A:BBI402 4.3 90.0 1.0
CAV A:BBI402 4.5 94.9 0.5
CAQ A:BBI402 4.8 0.4 0.5
CAD A:BBI402 4.9 0.7 1.0
CAA A:BBI402 4.9 83.2 1.0

Iodine binding site 2 out of 2 in 4o8z

Go back to Iodine Binding Sites List in 4o8z
Iodine binding site 2 out of 2 in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:0.4
occ:0.50
IAS A:BBI402 0.0 0.4 0.5
CAR A:BBI402 2.0 0.1 0.5
CAV A:BBI402 2.6 94.9 0.5
CAT A:BBI402 3.0 0.0 0.5
CAQ A:BBI402 3.0 0.4 0.5
OAU A:BBI402 3.2 0.8 0.5
CAW A:BBI402 3.3 88.4 0.5
CG1 A:VAL324 4.1 48.2 1.0
CBC A:BBI402 4.3 0.4 0.5
CAP A:BBI402 4.3 0.7 0.5
NAX A:BBI402 4.4 85.0 0.5
CBA A:BBI402 4.5 83.3 0.5
CBE A:BBI402 4.8 0.8 0.5
CB A:VAL324 4.8 42.6 1.0
CG2 A:VAL324 4.9 47.5 1.0

Reference:

B.Liu, B.Liu. N/A N/A.
Page generated: Sun Dec 13 19:35:28 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy