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Iodine in PDB 4o8z: Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone

Protein crystallography data

The structure of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone, PDB code: 4o8z was solved by B.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.73 / 2.00
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 116.317, 116.317, 45.655, 90.00, 90.00, 120.00
R / Rfree (%) 16.7 / 20.4

Other elements in 4o8z:

The structure of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone (pdb code 4o8z). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone, PDB code: 4o8z:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 4o8z

Go back to Iodine Binding Sites List in 4o8z
Iodine binding site 1 out of 2 in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:0.1
occ:0.50
IBD A:BBI402 0.0 0.1 0.5
CBC A:BBI402 2.1 0.4 0.5
CBE A:BBI402 2.9 0.8 0.5
CAT A:BBI402 3.0 0.0 0.5
OAU A:BBI402 3.2 0.8 0.5
CAP A:BBI402 4.3 0.7 0.5
CAC A:BBI402 4.3 99.0 1.0
CAR A:BBI402 4.3 0.1 0.5
CAB A:BBI402 4.3 90.0 1.0
CAV A:BBI402 4.5 94.9 0.5
CAQ A:BBI402 4.8 0.4 0.5
CAD A:BBI402 4.9 0.7 1.0
CAA A:BBI402 4.9 83.2 1.0

Iodine binding site 2 out of 2 in 4o8z

Go back to Iodine Binding Sites List in 4o8z
Iodine binding site 2 out of 2 in the Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Human SIRT3 in Complex with Compound (2- Butylbenzofuran-3-Yl)(4-(2-(Diethylamino)Ethoxy)-3,5-Diiodophenyl) Methanone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:0.4
occ:0.50
IAS A:BBI402 0.0 0.4 0.5
CAR A:BBI402 2.0 0.1 0.5
CAV A:BBI402 2.6 94.9 0.5
CAT A:BBI402 3.0 0.0 0.5
CAQ A:BBI402 3.0 0.4 0.5
OAU A:BBI402 3.2 0.8 0.5
CAW A:BBI402 3.3 88.4 0.5
CG1 A:VAL324 4.1 48.2 1.0
CBC A:BBI402 4.3 0.4 0.5
CAP A:BBI402 4.3 0.7 0.5
NAX A:BBI402 4.4 85.0 0.5
CBA A:BBI402 4.5 83.3 0.5
CBE A:BBI402 4.8 0.8 0.5
CB A:VAL324 4.8 42.6 1.0
CG2 A:VAL324 4.9 47.5 1.0

Reference:

B.Liu, B.Liu. N/A N/A.
Page generated: Sun Aug 11 18:55:55 2024

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