Iodine in PDB 4q2m: Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine

The structure of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine, PDB code: 4q2m was solved by X.C.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.08 / 1.49
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	34.970, 61.134, 70.391, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 24.7

The structure of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine also contains other interesting chemical elements:

Cadmium

(Cd)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Iodine atom in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine (pdb code 4q2m). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 18 binding sites of Iodine where determined in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine, PDB code: 4q2m:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3005 b:42.0 occ:0.29 I A:IOD3006 3.0 46.9 0.3 O A:HOH4025 3.2 46.3 1.0

Iodine binding site 2 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3006 b:46.9 occ:0.33 I A:IOD3005 3.0 42.0 0.3 CE A:LYS49 3.8 44.7 1.0 NZ A:LYS49 4.1 46.2 1.0 OE2 A:GLU36 4.5 55.9 1.0 O A:HOH4025 4.8 46.3 1.0 CD A:GLU36 4.9 49.9 1.0 O A:HOH4023 5.0 47.0 1.0

Iodine binding site 3 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3007 b:41.9 occ:0.26 I A:IOD3008 3.0 60.6 0.6 I A:IOD3009 3.0 42.0 0.5 CB A:TYR6 4.8 20.0 1.0

Iodine binding site 4 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3008 b:60.6 occ:0.58 I A:IOD3007 3.0 41.9 0.3 CG A:PRO5 3.5 20.0 1.0 CB A:PRO5 3.6 20.0 1.0 N A:TYR6 3.9 44.8 1.0 C A:PRO5 4.0 44.0 1.0 CA A:TYR6 4.1 42.6 1.0 CB A:TYR6 4.1 20.0 1.0 CD A:PRO5 4.3 20.0 1.0 O A:PRO5 4.3 45.3 1.0 CA A:PRO5 4.4 43.4 1.0 I A:IOD3009 4.9 42.0 0.5

Iodine binding site 5 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3009 b:42.0 occ:0.49 I A:IOD3007 3.0 41.9 0.3 OG A:SER52 3.1 52.7 1.0 CB A:SER52 4.0 44.7 1.0 CB A:TYR6 4.3 20.0 1.0 C A:SER52 4.3 41.9 1.0 O A:SER52 4.4 39.9 1.0 CA A:TYR6 4.4 42.6 1.0 O A:TYR6 4.5 42.5 1.0 CG A:LYS53 4.5 48.9 1.0 N A:LYS53 4.5 44.6 1.0 CA A:SER52 4.7 40.4 1.0 C A:TYR6 4.9 41.6 1.0 I A:IOD3008 4.9 60.6 0.6

Iodine binding site 6 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3010 b:0.7 occ:0.15 NH2 A:ARG11 2.9 53.4 1.0 CD A:CD3004 2.9 35.6 0.1 OG A:SER45 3.0 36.9 0.6 O A:HOH4001 3.1 49.6 1.0 OE2 A:GLU43 3.1 48.2 0.5 O A:GLU43 3.1 41.6 1.0 CB A:GLU43 3.5 43.2 0.5 CG A:GLU43 3.5 44.1 0.6 OE1 A:GLU43 3.6 38.6 0.6 CB A:GLU43 3.7 44.2 0.6 O A:HOH4034 3.7 54.5 1.0 CD A:GLU43 3.8 39.9 0.6 CD A:GLU43 3.9 46.1 0.5 CZ A:ARG11 4.0 51.1 1.0 C A:GLU43 4.0 40.3 1.0 CG A:GLU43 4.0 44.2 0.5 CB A:SER45 4.2 35.6 0.4 CA A:GLU43 4.2 41.4 0.6 CB A:SER45 4.2 36.8 0.6 CA A:GLU43 4.2 41.1 0.5 OG A:SER45 4.3 35.4 0.4 NE A:ARG11 4.4 46.9 1.0 O A:HOH4002 4.5 36.7 1.0 O A:ACY3001 4.5 55.8 1.0 OE2 A:GLU43 4.7 40.5 0.6 O A:HOH4032 4.9 64.7 1.0 NH1 A:ARG11 5.0 51.1 1.0

Iodine binding site 7 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3011 b:41.6 occ:0.43 I A:IOD3012 2.8 35.9 0.4 OE1 A:GLU61 4.3 35.1 0.2 I A:IOD3013 4.3 48.9 0.4 O A:HOH4005 4.5 33.0 1.0 OE2 A:GLU61 4.7 36.0 0.2 O A:HOH4004 4.8 32.7 1.0 CD A:GLU61 4.9 35.4 0.2 I A:IOD3014 4.9 35.5 0.4 OE1 A:GLU61 5.0 45.5 0.8

Iodine binding site 8 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3012 b:35.9 occ:0.37 OE2 A:GLU61 2.8 38.1 0.8 I A:IOD3011 2.8 41.6 0.4 I A:IOD3014 2.9 35.5 0.4 I A:IOD3013 3.0 48.9 0.4 OE1 A:GLU61 3.1 35.1 0.2 OE2 A:GLU61 3.1 36.0 0.2 CD A:GLU61 3.2 35.4 0.2 CD A:GLU61 3.4 40.2 0.8 OE1 A:GLU61 3.7 45.5 0.8 O A:HOH4005 3.9 33.0 1.0 CG A:GLU61 4.3 33.4 0.2 CG A:GLU61 4.3 37.2 0.8 CD A:ARG57 4.4 43.4 1.0 NH1 A:ARG57 4.5 44.2 1.0

Iodine binding site 9 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3013 b:48.9 occ:0.38 I A:IOD3012 3.0 35.9 0.4 NH1 A:ARG57 4.1 44.2 1.0 CD A:ARG57 4.2 43.4 1.0 I A:IOD3011 4.3 41.6 0.4 CZ A:ARG57 4.4 44.8 1.0 NE A:ARG57 4.4 46.0 1.0 O A:HOH4005 4.5 33.0 1.0 OE2 A:GLU61 4.6 38.1 0.8 I A:IOD3014 4.7 35.5 0.4

Iodine binding site 10 out of 18 in the Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Structure of the E. Coli Yajr Transporter Yam Domain Combined Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I3014 b:35.5 occ:0.37 I A:IOD3012 2.9 35.9 0.4 OE1 A:GLU61 4.1 35.1 0.2 OE2 A:GLU61 4.3 38.1 0.8 CD A:ARG57 4.4 43.4 1.0 CD A:GLU61 4.5 35.4 0.2 CD A:GLU61 4.5 40.2 0.8 CG A:GLU61 4.6 37.2 0.8 CG A:ARG57 4.7 40.1 1.0 I A:IOD3013 4.7 48.9 0.4 CD1 A:PHE58 4.8 36.1 1.0 CG A:GLU61 4.8 33.4 0.2 CA A:PHE58 4.9 40.4 1.0 I A:IOD3011 4.9 41.6 0.4

D.Jiang, Y.Zhao, J.Fan, X.Liu, Y.Wu, W.Feng, X.C.Zhang. Atomic Resolution Structure of the E. Coli Yajr Transporter Yam Domain Biochem.Biophys.Res.Commun. 2014.
ISSN: ESSN 1090-2104
PubMed: 24952155
DOI: 10.1016/J.BBRC.2014.06.053