Iodine in PDB 4w6z: Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme

All present enzymatic activity of Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme:
1.1.1.1;

The structure of Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme, PDB code: 4w6z was solved by B.V.Plapp, B.R.Savarimuthu, S.Ramaswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.09 / 2.40
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	144.338, 144.338, 128.204, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 22.2

The structure of Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme also contains other interesting chemical elements:

Fluorine	(F)	12 atoms
Zinc	(Zn)	8 atoms

The binding sites of Iodine atom in the Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme (pdb code 4w6z). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme, PDB code: 4w6z:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ A:I403 b:59.9 occ:1.00 I8A A:8ID403 0.0 59.9 1.0 C8A A:8ID403 2.2 48.3 1.0 N7A A:8ID403 3.0 47.3 1.0 N9A A:8ID403 3.2 36.2 1.0 C2B A:8ID403 3.5 28.8 1.0 O4B A:8ID403 3.7 29.5 1.0 C1B A:8ID403 3.7 30.4 1.0 N A:VAL247 4.0 33.1 1.0 CB A:VAL247 4.1 36.3 1.0 C5A A:8ID403 4.2 39.9 1.0 C4A A:8ID403 4.3 40.2 1.0 O A:VAL247 4.3 38.4 1.0 C A:VAL247 4.4 36.6 1.0 CA A:VAL247 4.5 35.0 1.0 C3B A:8ID403 4.5 30.1 1.0 O2B A:8ID403 4.5 27.9 1.0 C4B A:8ID403 4.6 29.0 1.0 CG2 A:VAL247 4.6 34.0 1.0

Iodine binding site 2 out of 2 in the Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme within 5.0Å range: probe atom residue distance (Å) B Occ C:I403 b:44.5 occ:1.00 I8A C:8ID403 0.0 44.5 1.0 C8A C:8ID403 2.1 33.5 1.0 N7A C:8ID403 2.9 34.5 1.0 N9A C:8ID403 3.1 31.1 1.0 O4B C:8ID403 3.5 23.9 1.0 C2B C:8ID403 3.6 23.9 1.0 C1B C:8ID403 3.6 24.4 1.0 C5A C:8ID403 4.1 32.4 1.0 N C:VAL247 4.1 27.6 1.0 C4A C:8ID403 4.2 32.7 1.0 CB C:VAL247 4.2 28.5 1.0 O2B C:8ID403 4.3 28.6 1.0 C C:VAL247 4.4 28.0 1.0 CA C:VAL247 4.5 27.3 1.0 O C:VAL247 4.5 28.0 1.0 C3B C:8ID403 4.6 22.8 1.0 C4B C:8ID403 4.6 21.4 1.0 CG2 C:VAL247 4.7 28.9 1.0 N C:SER248 4.8 26.2 1.0 CB C:SER248 5.0 26.7 1.0

S.B.Raj, S.Ramaswamy, B.V.Plapp. Yeast Alcohol Dehydrogenase Structure and Catalysis. Biochemistry V. 53 5791 2014.
ISSN: ISSN 0006-2960
PubMed: 25157460
DOI: 10.1021/BI5006442