Iodine in PDB 4xyz: Crystal Structure of K33 Linked Di-Ubiquitin

The structure of Crystal Structure of K33 Linked Di-Ubiquitin, PDB code: 4xyz was solved by Y.A.Kristariyanto, S.A.Abdul Rehman, S.Y.Choi, S.Ritorto, D.G.Campbell, N.A.Morrice, R.Toth, Y.Kulathu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.83 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	29.480, 57.017, 33.984, 90.00, 95.45, 90.00
R / Rfree (%)	16.2 / 21.4

The binding sites of Iodine atom in the Crystal Structure of K33 Linked Di-Ubiquitin (pdb code 4xyz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of K33 Linked Di-Ubiquitin, PDB code: 4xyz:

Iodine binding site 1 out of 1 in the Crystal Structure of K33 Linked Di-Ubiquitin


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of K33 Linked Di-Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ A:I102 b:11.8 occ:0.92 O B:HOH144 3.5 16.0 1.0 O A:HOH246 3.5 10.3 1.0 O A:HOH245 3.6 9.4 1.0 O B:HOH138 3.6 11.6 1.0 N A:LEU71 3.6 8.4 1.0 CA A:VAL70 4.1 8.0 1.0 CB B:THR7 4.2 10.1 1.0 CB A:VAL70 4.2 8.1 1.0 CG A:LEU71 4.3 9.4 1.0 CB A:LEU71 4.3 9.4 1.0 C A:VAL70 4.4 7.6 1.0 CG2 B:THR7 4.4 11.1 1.0 CB B:LEU71 4.5 9.8 1.0 CG1 A:VAL70 4.5 9.1 1.0 CD1 A:LEU71 4.5 10.1 1.0 CA A:LEU71 4.6 8.9 1.0 OG1 B:THR7 4.6 10.5 1.0 CD1 A:LEU8 4.7 16.2 1.0 N B:LEU71 4.8 8.4 1.0 CG2 B:THR9 4.9 11.0 1.0 O A:LEU71 5.0 10.5 1.0

Y.A.Kristariyanto, S.Y.Choi, S.A.Abdul Rehman, M.S.Ritorto, D.G.Campbell, N.A.Morrice, R.Toth, Y.Kulathu. Assembly and Structure of LYS33-Linked Polyubiquitin Reveals Distinct Conformations. Biochem.J. 2015.
ISSN: ESSN 1470-8728
PubMed: 25723849
DOI: 10.1042/BJ20141502