Iodine in PDB 5akx: Ligand Complex Structure of Soluble Epoxide Hydrolase

The structure of Ligand Complex Structure of Soluble Epoxide Hydrolase, PDB code: 5akx was solved by L.Oster, S.Tapani, Y.Xue, H.Kack, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.41 / 2.09
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.819, 92.819, 244.136, 90.00, 90.00, 120.00
R / Rfree (%)	18.73 / 21.74

The binding sites of Iodine atom in the Ligand Complex Structure of Soluble Epoxide Hydrolase (pdb code 5akx). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Ligand Complex Structure of Soluble Epoxide Hydrolase, PDB code: 5akx:

Iodine binding site 1 out of 1 in the Ligand Complex Structure of Soluble Epoxide Hydrolase


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Ligand Complex Structure of Soluble Epoxide Hydrolase within 5.0Å range: probe atom residue distance (Å) B Occ A:I1551 b:54.5 occ:1.00 I7 A:8NY1551 0.0 54.5 1.0 C6 A:8NY1551 2.1 53.3 1.0 C1 A:8NY1551 3.0 52.9 1.0 C5 A:8NY1551 3.1 51.4 1.0 CE A:MET419 4.0 73.8 1.0 CD1 A:PHE267 4.0 28.3 1.0 CD2 A:LEU408 4.2 33.3 1.0 CE1 A:PHE267 4.2 29.2 1.0 O A:PHE267 4.3 26.4 1.0 C2 A:8NY1551 4.3 52.4 1.0 CE2 A:TYR383 4.3 39.1 1.0 C4 A:8NY1551 4.4 50.8 1.0 O A:HOH2316 4.5 38.4 1.0 CD2 A:TYR383 4.6 38.4 1.0 OH A:TYR466 4.6 29.3 1.0 CH2 A:TRP525 4.6 26.0 1.0 CZ A:PHE387 4.7 32.0 1.0 CE2 A:PHE387 4.7 34.0 1.0 C3 A:8NY1551 4.8 51.3 1.0 CZ2 A:TRP525 4.8 25.6 1.0 CD A:PRO268 4.9 23.0 1.0

L.Oster, S.Tapani, Y.Xue, H.Kack. Successful Generation of Structural Information For Fragment-Based Drug Discovery. Drug Discov Today 2015.
ISSN: ESSN 1878-5832
PubMed: 25931264
DOI: 10.1016/J.DRUDIS.2015.04.005