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Iodine in PDB 5dam: Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg)

Protein crystallography data

The structure of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg), PDB code: 5dam was solved by G.R.Clark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.638, 40.408, 64.344, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 29.7

Other elements in 5dam:

The structure of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) (pdb code 5dam). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg), PDB code: 5dam:

Iodine binding site 1 out of 1 in 5dam

Go back to Iodine Binding Sites List in 5dam
Iodine binding site 1 out of 1 in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I201

b:43.0
occ:0.79
I A:58F201 0.0 43.0 0.8
C A:58F201 2.1 25.2 1.0
C4 A:58F201 3.0 31.8 1.0
C2 A:58F201 3.1 24.9 1.0
C5' A:DT7 3.6 26.8 1.0
C4' B:DT9 3.8 26.4 1.0
C4' A:DT7 4.0 21.3 1.0
C5' B:DT9 4.1 27.4 1.0
O A:HOH323 4.2 45.8 1.0
O4' B:DT9 4.3 27.5 1.0
C3 A:58F201 4.4 27.1 1.0
C5 A:58F201 4.4 31.9 1.0
O4' A:DT7 4.6 22.2 1.0
O3' A:DA6 4.8 22.1 1.0
O3' B:DT9 4.9 22.5 1.0
C1 A:58F201 4.9 23.8 1.0
O5' A:DT7 4.9 24.3 1.0

Reference:

G.R.Clark, G.R.Clark. N/A N/A.
Page generated: Sun Aug 11 20:43:42 2024

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