Iodine in PDB 5dl9: Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students

All present enzymatic activity of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students:
3.2.1.17;

The structure of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students, PDB code: 5dl9 was solved by R.Bednarski, N.Cirricione, A.Greco, R.Hodgson, S.Kent, J.Mcgowan, B.Notherm, M.Patt, L.Vue, C.Mbianchetti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.57 / 1.38
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.459, 79.459, 37.042, 90.00, 90.00, 90.00
R / Rfree (%)	15.5 / 18.4

The binding sites of Iodine atom in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students (pdb code 5dl9). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 4 binding sites of Iodine where determined in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students, PDB code: 5dl9:
Jump to Iodine binding site number: 1; 2; 3; 4;

Iodine binding site 1 out of 4 in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:16.5 occ:0.58 NH1 A:ARG68 3.5 19.6 0.5 NH2 A:ARG68 3.5 15.1 0.5 O A:HOH313 3.9 55.8 1.0 CD A:ARG68 3.9 17.9 0.5 CD A:ARG68 4.3 18.5 0.5 CZ A:ARG68 4.6 14.6 0.5 CZ A:ARG68 4.6 18.8 0.5 NE A:ARG68 4.7 15.6 0.5 CG A:ARG68 4.9 17.2 0.5 CB A:ARG68 4.9 16.4 0.5 CB A:ARG68 4.9 16.7 0.5 NE A:ARG68 4.9 19.3 0.5

Iodine binding site 2 out of 4 in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students within 5.0Å range: probe atom residue distance (Å) B Occ A:I202 b:13.1 occ:0.59 ND2 A:ASN113 3.4 11.6 1.0 CB A:ASN113 3.7 11.0 1.0 C2 A:EDO206 3.8 14.7 1.0 O A:VAL109 3.9 11.4 0.1 CA A:ALA110 4.0 10.5 1.0 C1 A:EDO206 4.1 15.9 1.0 CG A:ASN113 4.1 11.6 1.0 CG1 A:VAL109 4.3 13.4 0.9 O A:VAL109 4.4 10.4 0.9 N A:ALA110 4.4 10.0 1.0 C A:VAL109 4.4 10.6 0.1 CD A:ARG114 4.4 13.6 1.0 CB A:ALA110 4.5 10.9 1.0 C A:VAL109 4.5 9.7 0.9 CG2 A:VAL109 4.7 9.8 0.1 CG A:ARG114 4.7 13.2 1.0

Iodine binding site 3 out of 4 in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students within 5.0Å range: probe atom residue distance (Å) B Occ A:I203 b:22.9 occ:0.51 NZ A:LYS33 3.3 22.0 1.0 CE A:LYS33 3.8 20.6 1.0 CE2 A:PHE38 4.0 12.4 1.0 CD A:ARG5 4.0 14.1 1.0 CZ3 A:TRP123 4.2 18.7 1.0 CD A:LYS33 4.2 17.9 1.0 CB A:ARG5 4.3 13.4 1.0 CZ A:PHE38 4.5 11.7 1.0 CG A:ARG5 4.6 13.5 1.0 NE A:ARG5 4.8 15.6 1.0 CE3 A:TRP123 4.8 16.3 1.0 O A:HOH390 4.8 16.5 1.0 CD2 A:PHE38 5.0 12.5 1.0

Iodine binding site 4 out of 4 in the Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students within 5.0Å range: probe atom residue distance (Å) B Occ A:I204 b:19.2 occ:0.47 O A:HOH394 3.5 28.0 1.0 O A:HOH326 3.7 31.2 1.0 N A:ILE88 3.8 15.0 1.0 CG1 A:ILE88 4.0 14.8 1.0 CE1 A:HIS15 4.0 18.3 1.0 O A:SER86 4.2 19.1 1.0 CA A:ASP87 4.2 17.1 1.0 CB A:ALA11 4.3 15.0 1.0 CZ A:PHE3 4.3 14.6 1.0 OD1 A:ASP87 4.5 20.1 1.0 C A:ASP87 4.5 16.0 1.0 CB A:ILE88 4.7 13.6 1.0 CE2 A:PHE3 4.7 14.8 1.0 CG2 A:ILE88 4.7 15.3 1.0 CD1 A:ILE88 4.8 16.9 1.0 ND1 A:HIS15 4.8 18.2 1.0 CA A:ILE88 4.8 13.8 1.0 NE2 A:HIS15 4.9 20.2 1.0 CG A:ASP87 5.0 21.5 1.0

R.Bednarski, N.Cirricione, A.Greco, R.Hodgson, S.Kent, J.Mcgowan, B.Notherm, M.Patt, L.Vue, C.Mbianchetti. Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students To Be Published.