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Iodine in PDB 5ijs: Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Enzymatic activity of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
All present enzymatic activity of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog:
3.1.4.39;
3.1.4.39;
Protein crystallography data
The structure of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog, PDB code: 5ijs
was solved by
J.Hausmann,
R.P.Joosten,
A.Perrakis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 2.20 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 53.750, 63.450, 70.550, 99.33, 105.91, 99.51 |
| R / Rfree (%) | 20.3 / 23.9 |
Other elements in 5ijs:
The structure of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog also contains other interesting chemical elements:
| Zinc | (Zn) | 2 atoms |
| Vanadium | (V) | 1 atom |
| Calcium | (Ca) | 1 atom |
| Sodium | (Na) | 2 atoms |
Iodine Binding Sites:
The binding sites of Iodine atom in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
(pdb code 5ijs). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 6 binding sites of Iodine where determined in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog, PDB code: 5ijs:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iodine where determined in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog, PDB code: 5ijs:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6;
Iodine binding site 1 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 1 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Iodine binding site 2 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 2 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Iodine binding site 3 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 3 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Iodine binding site 4 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 4 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 4 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Iodine binding site 5 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 5 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 5 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Iodine binding site 6 out of 6 in 5ijs
Go back to
Iodine Binding Sites List in 5ijs
Iodine binding site 6 out
of 6 in the Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 6 of Crystal Structure of Autotaxin with Orthovanadate Bound As A Trigonal Bipyramidal Intermediate Analog within 5.0Å range:
|
Reference:
J.Hausmann,
W.J.Keune,
A.L.Hipgrave Ederveen,
L.Van Zeijl,
R.P.Joosten,
A.Perrakis.
Structural Snapshots of the Catalytic Cycle of the Phosphodiesterase Autotaxin. J.Struct.Biol. V. 195 199 2016.
ISSN: ESSN 1095-8657
PubMed: 27268273
DOI: 10.1016/J.JSB.2016.06.002
Page generated: Sun Aug 11 21:04:32 2024
ISSN: ESSN 1095-8657
PubMed: 27268273
DOI: 10.1016/J.JSB.2016.06.002
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