Iodine in PDB 5k7p: Microed Structure of Xylanase at 2.3 A Resolution

All present enzymatic activity of Microed Structure of Xylanase at 2.3 A Resolution:
3.2.1.8;

The binding sites of Iodine atom in the Microed Structure of Xylanase at 2.3 A Resolution (pdb code 5k7p). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Microed Structure of Xylanase at 2.3 A Resolution, PDB code: 5k7p:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Microed Structure of Xylanase at 2.3 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Microed Structure of Xylanase at 2.3 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:51.6 occ:1.00 O A:HOH407 3.3 19.8 1.0 N A:SER179 3.4 18.1 1.0 CA A:ARG178 4.1 21.6 1.0 OG A:SER180 4.1 25.0 1.0 CB A:ARG178 4.2 21.1 1.0 C A:ARG178 4.3 19.7 1.0 CA A:SER179 4.3 20.1 1.0 N A:SER180 4.3 19.5 1.0 CB A:SER179 4.4 21.7 1.0 O A:HOH415 4.4 21.2 1.0 C A:SER179 4.5 21.5 1.0 OG A:SER179 4.7 24.2 1.0 CB A:SER180 5.0 21.8 1.0

Iodine binding site 2 out of 2 in the Microed Structure of Xylanase at 2.3 A Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Microed Structure of Xylanase at 2.3 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:81.4 occ:1.00 N A:VAL156 3.4 33.9 1.0 NE2 A:GLN158 3.6 41.6 1.0 CA A:ARG155 4.0 31.5 1.0 CG A:GLN158 4.1 34.9 1.0 O A:GLN154 4.2 29.0 1.0 NH1 A:ARG155 4.2 40.1 1.0 C A:ARG155 4.2 30.6 1.0 CD A:GLN158 4.2 39.5 1.0 O A:VAL156 4.2 33.2 1.0 CB A:VAL156 4.3 31.9 1.0 CA A:VAL156 4.3 29.8 1.0 CG2 A:VAL156 4.5 29.3 1.0 CD A:ARG155 4.7 34.9 1.0 C A:VAL156 4.7 29.1 1.0 CB A:ARG155 4.7 30.3 1.0 CZ A:ARG155 4.8 41.3 1.0 N A:ARG155 4.9 30.8 1.0 C A:GLN154 5.0 28.1 1.0

M.J.De La Cruz, J.Hattne, D.Shi, P.Seidler, J.Rodriguez, F.E.Reyes, M.R.Sawaya, D.Cascio, S.C.Weiss, S.K.Kim, C.S.Hinck, A.P.Hinck, G.Calero, D.Eisenberg, T.Gonen. Atomic-Resolution Structures From Fragmented Protein Crystals with the Cryoem Method Microed. Nat. Methods V. 14 399 2017.
ISSN: ESSN 1548-7105
PubMed: 28192420
DOI: 10.1038/NMETH.4178