Iodine in PDB 5l1a: Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila

The structure of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila, PDB code: 5l1a was solved by C.Chang, X.Xu, H.Cui, V.Yim, A.Savchenko, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.45 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.154, 44.657, 54.136, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.6

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila (pdb code 5l1a). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 15 binding sites of Iodine where determined in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila, PDB code: 5l1a:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:44.4 occ:1.00 I3 A:I3C201 0.0 44.4 1.0 C6 A:I3C201 2.1 39.3 1.0 C5 A:I3C201 3.1 34.5 1.0 C1 A:I3C201 3.1 35.8 1.0 N13 A:I3C201 3.3 32.4 1.0 C7 A:I3C201 3.3 34.1 1.0 O8 A:I3C201 3.7 34.5 1.0 O9 A:I3C201 3.8 32.0 1.0 I1 A:I3C202 4.1 27.0 1.0 C4 A:I3C201 4.5 32.5 1.0 C2 A:I3C201 4.5 33.5 1.0 O12 A:I3C202 4.5 39.4 1.0 O A:HOH345 4.7 32.9 1.0 O A:HOH308 4.8 28.1 1.0 CG2 A:THR92 4.8 16.5 1.0

Iodine binding site 2 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:35.6 occ:1.00 I2 A:I3C201 0.0 35.6 1.0 C4 A:I3C201 2.1 32.5 1.0 C5 A:I3C201 3.1 34.5 1.0 C3 A:I3C201 3.1 30.4 1.0 N13 A:I3C201 3.2 32.4 1.0 C10 A:I3C201 3.3 27.5 1.0 O A:THR88 3.5 20.6 1.0 O A:HOH311 3.6 28.7 1.0 O11 A:I3C201 3.6 26.5 1.0 CG2 A:ILE89 3.7 12.3 1.0 O12 A:I3C201 3.8 26.6 1.0 OG1 A:THR92 4.1 14.5 1.0 C6 A:I3C201 4.5 39.3 1.0 C2 A:I3C201 4.5 33.5 1.0 C A:THR88 4.5 15.3 1.0 CG2 A:THR88 4.5 12.6 1.0 ND2 A:ASN67 4.5 26.2 1.0 CA A:ILE89 4.6 13.2 1.0 CB A:ILE89 4.7 11.9 1.0

Iodine binding site 3 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:35.0 occ:1.00 I1 A:I3C201 0.0 35.0 1.0 C2 A:I3C201 2.1 33.5 1.0 C3 A:I3C201 3.1 30.4 1.0 C1 A:I3C201 3.1 35.8 1.0 C10 A:I3C201 3.3 27.5 1.0 C7 A:I3C201 3.3 34.1 1.0 O A:HOH338 3.4 22.3 1.0 O12 A:I3C201 3.6 26.6 1.0 O9 A:I3C201 3.7 32.0 1.0 O8 A:I3C201 3.8 34.5 1.0 O11 A:I3C201 3.8 26.5 1.0 I3 A:I3C204 3.8 73.8 1.0 CG A:GLU64 3.9 18.7 1.0 O A:THR92 3.9 15.2 1.0 OE2 A:GLU60 4.0 33.0 1.0 CB A:GLU64 4.1 12.9 1.0 CD A:GLU64 4.1 22.6 1.0 O A:HOH305 4.3 29.1 1.0 CB A:THR92 4.3 15.4 1.0 O A:HOH306 4.3 18.0 1.0 OE2 A:GLU64 4.3 23.5 1.0 C4 A:I3C201 4.5 32.5 1.0 CG A:GLU60 4.5 25.6 1.0 C6 A:I3C201 4.5 39.3 1.0 O9 A:I3C204 4.6 76.0 1.0 OG1 A:THR92 4.7 14.5 1.0 OE1 A:GLU64 4.7 23.7 1.0 CD A:GLU60 4.8 31.2 1.0 C A:THR92 4.8 15.0 1.0 O A:GLU60 4.8 15.1 1.0 CA A:GLU64 5.0 9.7 1.0

Iodine binding site 4 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I202 b:32.0 occ:1.00 I3 A:I3C202 0.0 32.0 1.0 C6 A:I3C202 2.1 32.0 1.0 C5 A:I3C202 3.1 29.9 1.0 C1 A:I3C202 3.1 32.3 1.0 N13 A:I3C202 3.3 26.5 1.0 C7 A:I3C202 3.3 35.8 1.0 O8 A:I3C202 3.8 37.5 1.0 O9 A:I3C202 3.8 37.4 1.0 C2 A:I3C202 4.5 28.8 1.0 C4 A:I3C202 4.5 29.3 1.0

Iodine binding site 5 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I202 b:26.9 occ:1.00 I2 A:I3C202 0.0 26.9 1.0 C4 A:I3C202 2.1 29.3 1.0 C5 A:I3C202 3.1 29.9 1.0 C3 A:I3C202 3.1 31.2 1.0 N13 A:I3C202 3.2 26.5 1.0 C10 A:I3C202 3.4 36.9 1.0 O11 A:I3C202 3.6 40.5 1.0 O12 A:I3C202 4.1 39.4 1.0 O A:HOH302 4.4 47.7 1.0 C6 A:I3C202 4.5 32.0 1.0 C2 A:I3C202 4.5 28.8 1.0

Iodine binding site 6 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I202 b:27.0 occ:1.00 I1 A:I3C202 0.0 27.0 1.0 C2 A:I3C202 2.1 28.8 1.0 C1 A:I3C202 3.1 32.3 1.0 C3 A:I3C202 3.1 31.2 1.0 C7 A:I3C202 3.2 35.8 1.0 O9 A:I3C201 3.3 32.0 1.0 C10 A:I3C202 3.3 36.9 1.0 O12 A:I3C202 3.5 39.4 1.0 O A:HOH308 3.6 28.1 1.0 O9 A:I3C202 3.6 37.4 1.0 O8 A:I3C202 3.7 37.5 1.0 O A:HOH341 3.9 44.6 1.0 O11 A:I3C202 3.9 40.5 1.0 I3 A:I3C201 4.1 44.4 1.0 C7 A:I3C201 4.2 34.1 1.0 CG2 A:THR92 4.4 16.5 1.0 C6 A:I3C202 4.5 32.0 1.0 C4 A:I3C202 4.5 29.3 1.0 C1 A:I3C201 4.8 35.8 1.0 C6 A:I3C201 4.8 39.3 1.0 O A:HOH302 5.0 47.7 1.0

Iodine binding site 7 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I203 b:37.8 occ:1.00 I3 A:I3C203 0.0 37.8 1.0 C6 A:I3C203 2.1 43.9 1.0 C1 A:I3C203 3.1 45.8 1.0 C5 A:I3C203 3.1 48.6 1.0 N13 A:I3C203 3.3 47.6 1.0 C7 A:I3C203 3.3 40.5 1.0 CZ A:PHE86 3.5 14.2 1.0 O A:ASP99 3.5 16.6 1.0 O9 A:I3C203 3.6 38.5 1.0 O A:HOH335 3.6 31.7 1.0 CB A:ALA103 3.7 19.1 1.0 C A:ASP99 3.8 18.1 1.0 O8 A:I3C203 3.8 38.0 1.0 CE2 A:PHE86 3.9 14.7 1.0 CA A:VAL100 4.0 19.4 1.0 N A:VAL100 4.1 19.5 1.0 CB A:ASP99 4.1 21.2 1.0 CE1 A:PHE86 4.1 13.2 1.0 O A:HOH304 4.3 37.6 1.0 C2 A:I3C203 4.5 53.1 1.0 C4 A:I3C203 4.5 54.3 1.0 CA A:ASP99 4.5 19.1 1.0 CG2 A:VAL100 4.6 24.2 1.0 CD2 A:PHE86 4.8 14.1 1.0 CB A:VAL100 4.9 22.0 1.0

Iodine binding site 8 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I203 b:59.5 occ:1.00 I2 A:I3C203 0.0 59.5 1.0 C4 A:I3C203 2.1 54.3 1.0 C5 A:I3C203 3.1 48.6 1.0 C3 A:I3C203 3.1 51.9 1.0 N13 A:I3C203 3.2 47.6 1.0 O12 A:I3C203 3.3 46.3 1.0 C10 A:I3C203 3.4 47.7 1.0 O11 A:I3C203 4.2 46.7 1.0 C6 A:I3C203 4.5 43.9 1.0 C2 A:I3C203 4.5 53.1 1.0

Iodine binding site 9 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I203 b:57.6 occ:1.00 I1 A:I3C203 0.0 57.6 1.0 C2 A:I3C203 2.1 53.1 1.0 C1 A:I3C203 3.1 45.8 1.0 C3 A:I3C203 3.1 51.9 1.0 C7 A:I3C203 3.3 40.5 1.0 C10 A:I3C203 3.4 47.7 1.0 O11 A:I3C203 3.4 46.7 1.0 O A:HOH349 3.4 22.4 1.0 O8 A:I3C203 3.6 38.0 1.0 O9 A:I3C203 3.8 38.5 1.0 O12 A:I3C203 4.2 46.3 1.0 NE A:ARG96 4.4 51.0 1.0 C6 A:I3C203 4.5 43.9 1.0 O A:HOH304 4.5 37.6 1.0 C4 A:I3C203 4.5 54.3 1.0 CZ A:ARG96 4.6 54.3 1.0 NH2 A:ARG96 4.7 54.5 1.0 CD A:ARG96 4.9 48.9 1.0 O A:HOH325 5.0 24.0 1.0

Iodine binding site 10 out of 15 in the Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:I204 b:73.8 occ:1.00 I3 A:I3C204 0.0 73.8 1.0 C6 A:I3C204 2.1 75.3 1.0 C1 A:I3C204 3.1 79.5 1.0 C5 A:I3C204 3.1 72.3 1.0 OE1 A:GLU64 3.2 23.7 1.0 C7 A:I3C204 3.3 77.3 1.0 N13 A:I3C204 3.3 71.1 1.0 O9 A:I3C204 3.7 76.0 1.0 CD A:GLU64 3.7 22.6 1.0 O8 A:I3C204 3.8 76.3 1.0 I1 A:I3C201 3.8 35.0 1.0 CG A:GLU60 4.0 25.6 1.0 O A:HOH343 4.1 34.5 1.0 O A:HOH305 4.1 29.1 1.0 CG2 A:VAL61 4.1 11.1 1.0 O A:GLU60 4.2 15.1 1.0 OE2 A:GLU64 4.2 23.5 1.0 OE2 A:GLU60 4.3 33.0 1.0 CB A:GLU64 4.3 12.9 1.0 CD A:GLU60 4.3 31.2 1.0 CA A:VAL61 4.3 10.1 1.0 C A:GLU60 4.4 15.7 1.0 N A:VAL61 4.4 10.5 1.0 CG A:GLU64 4.5 18.7 1.0 C2 A:I3C204 4.5 83.0 1.0 C4 A:I3C204 4.5 70.7 1.0 CB A:GLU60 4.8 20.5 1.0 CB A:VAL61 4.8 10.3 1.0

C.Chang, X.Xu, H.Cui, V.Yim, A.Savchenko, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Uncharacterized Protein LPG2271 From Legionella Pneumophila To Be Published.