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Iodine in PDB 5mjo: Structure of PSB29 at 1.55A

Protein crystallography data

The structure of Structure of PSB29 at 1.55A, PDB code: 5mjo was solved by J.W.Murray, A.Kozlo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.16 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 31.240, 56.730, 47.730, 90.00, 104.72, 90.00
R / Rfree (%) 13.3 / 19.2

Other elements in 5mjo:

The structure of Structure of PSB29 at 1.55A also contains other interesting chemical elements:

Mercury (Hg) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Structure of PSB29 at 1.55A (pdb code 5mjo). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Structure of PSB29 at 1.55A, PDB code: 5mjo:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 5mjo

Go back to Iodine Binding Sites List in 5mjo
Iodine binding site 1 out of 2 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of PSB29 at 1.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I302

b:32.8
occ:1.00
SD A:MET86 3.6 30.7 1.0
HG A:HG301 3.7 45.3 1.0
CD1 A:ILE37 3.8 14.0 1.0
CD2 A:LEU91 3.8 23.5 1.0
SG A:CYS81 3.9 17.0 1.0
CG A:MET86 4.1 18.0 1.0
CA A:CYS81 4.1 10.3 1.0
CG A:GLU84 4.2 11.0 1.0
CB A:GLU84 4.2 10.0 1.0
CB A:MET86 4.2 17.0 1.0
CG2 A:ILE37 4.2 11.4 1.0
CD2 A:LEU80 4.4 28.7 1.0
I A:IOD303 4.4 42.6 1.0
CG1 A:VAL56 4.5 11.8 1.0
CE A:MET86 4.5 23.9 1.0
CB A:CYS81 4.6 13.8 1.0
N A:CYS81 4.7 9.3 1.0
CE2 A:PHE52 4.8 17.1 1.0
CD1 A:LEU91 4.8 23.6 1.0
O A:LEU80 4.8 10.9 1.0
CZ A:PHE52 4.9 16.0 1.0
CG A:LEU91 4.9 15.9 1.0
CG1 A:ILE37 4.9 10.9 1.0
O A:CYS81 5.0 13.0 1.0
CG2 A:VAL56 5.0 12.2 1.0

Iodine binding site 2 out of 2 in 5mjo

Go back to Iodine Binding Sites List in 5mjo
Iodine binding site 2 out of 2 in the Structure of PSB29 at 1.55A


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of PSB29 at 1.55A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I303

b:42.6
occ:1.00
HG A:HG301 2.3 45.3 1.0
CD2 A:LEU80 3.4 28.7 1.0
CD1 A:PHE77 3.6 15.6 1.0
CE1 A:PHE77 3.7 19.7 1.0
CG1 A:VAL56 3.7 11.8 1.0
CB A:LEU80 3.8 13.3 1.0
CD1 A:LEU80 3.9 26.9 1.0
CG A:LEU80 3.9 24.0 1.0
CD1 A:PHE60 4.2 11.3 1.0
O A:PHE77 4.2 12.3 1.0
CD2 A:LEU33 4.3 15.1 1.0
CG A:PHE77 4.3 13.0 1.0
SG A:CYS81 4.3 17.0 1.0
I A:IOD302 4.4 32.8 1.0
CZ A:PHE77 4.5 20.9 1.0
CA A:PHE77 4.6 11.7 1.0
CE1 A:PHE60 4.7 15.4 1.0
CG A:PHE60 4.7 11.5 1.0
N A:CYS81 4.7 9.3 1.0
CB A:PHE60 4.9 11.0 1.0
C A:PHE77 4.9 10.7 1.0
C A:LEU80 4.9 8.6 1.0
CB A:PHE77 5.0 13.6 1.0
CD1 A:ILE37 5.0 14.0 1.0

Reference:

M.Bec Kova, J.Yu, V.Krynicka, A.Kozlo, S.Shao, P.Konik, J.Komenda, J.W.Murray, P.J.Nixon. Structure of PSB29/THF1 and Its Association with the Ftsh Protease Complex Involved in Photosystem II Repair in Cyanobacteria. Philos. Trans. R. Soc. V. 372 2017LOND., B, Biol. Sci..
ISSN: ESSN 1471-2970
PubMed: 28808107
DOI: 10.1098/RSTB.2016.0394
Page generated: Sun Aug 11 21:30:04 2024

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