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Iodine in PDB 5v7f: T4 Lysozyme Y18YMI

Enzymatic activity of T4 Lysozyme Y18YMI

All present enzymatic activity of T4 Lysozyme Y18YMI:
3.2.1.17;

Protein crystallography data

The structure of T4 Lysozyme Y18YMI, PDB code: 5v7f was solved by A.-C.C.Carlsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.05 / 1.65
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.532, 60.532, 96.345, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 23.2

Iodine Binding Sites:

The binding sites of Iodine atom in the T4 Lysozyme Y18YMI (pdb code 5v7f). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the T4 Lysozyme Y18YMI, PDB code: 5v7f:

Iodine binding site 1 out of 1 in 5v7f

Go back to Iodine Binding Sites List in 5v7f
Iodine binding site 1 out of 1 in the T4 Lysozyme Y18YMI


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of T4 Lysozyme Y18YMI within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I18

b:34.6
occ:0.47
IE A:IYR18 0.0 34.6 0.5
CE A:IYR18 2.0 33.0 1.0
O A:HOH444 2.3 23.9 0.6
CF A:IYR18 2.9 40.1 1.0
CD A:IYR18 3.0 41.4 1.0
O A:HOH332 3.1 40.2 1.0
OF A:IYR18 3.2 47.4 1.0
O A:HOH444 3.6 27.2 0.4
O A:HOH448 3.6 43.0 1.0
O A:HOH455 3.8 42.6 1.0
CA A:ASP20 3.9 30.0 1.0
NH2 A:ARG14 4.0 35.6 0.3
CG2 A:THR26 4.0 25.2 1.0
O A:HOH395 4.1 27.3 1.0
CB A:ASP20 4.2 27.2 1.0
CG A:IYR18 4.3 37.2 1.0
CC A:IYR18 4.3 36.1 1.0
O A:LYS19 4.3 24.4 1.0
CB A:THR26 4.4 34.9 1.0
N A:ASP20 4.6 25.0 1.0
C A:LYS19 4.7 26.3 1.0
CH A:IYR18 4.8 35.5 1.0
CZ A:ARG14 4.9 30.5 0.3
OG1 A:THR26 4.9 31.4 1.0
O A:GLU11 4.9 29.0 1.0
O A:HOH427 4.9 44.8 1.0
C A:ASP20 4.9 32.0 1.0
NE A:ARG14 5.0 31.1 0.3

Reference:

A.C.Carlsson, M.R.Scholfield, R.K.Rowe, M.C.Ford, A.T.Alexander, R.A.Mehl, P.S.Ho. Increasing Enzyme Stability and Activity Through Hydrogen Bond-Enhanced Halogen Bonds. Biochemistry V. 57 4135 2018.
ISSN: ISSN 1520-4995
PubMed: 29921126
DOI: 10.1021/ACS.BIOCHEM.8B00603
Page generated: Sun Dec 13 19:41:36 2020

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