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Iodine in PDB 6an0: Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis

Enzymatic activity of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis

All present enzymatic activity of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis:
1.1.1.23;

Protein crystallography data

The structure of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis, PDB code: 6an0 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.45 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.520, 170.080, 65.900, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 19.2

Other elements in 6an0:

The structure of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis (pdb code 6an0). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 13 binding sites of Iodine where determined in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis, PDB code: 6an0:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 13 in 6an0

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Iodine binding site 1 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


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Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I507

b:29.5
occ:0.50
 O A:HOH854 3.3 45.5 1.0
O A:HOH721 3.4 23.9 1.0
CD2 A:LEU379 3.9 28.8 1.0
CB A:ALA115 4.0 23.4 1.0
CG A:LYS97 4.0 30.7 1.0
CG2 A:ILE383 4.4 18.7 1.0
CD A:LYS97 4.4 42.2 1.0
CE A:LYS97 4.5 43.7 1.0
CG A:LEU379 4.5 26.8 1.0
CB A:LYS97 4.5 27.3 1.0
CA A:ALA146 4.7 21.4 1.0
O A:HOH852 4.8 37.1 1.0
CA A:LYS97 4.8 26.7 1.0
CD1 A:ILE383 4.9 24.0 1.0
O A:ALA146 4.9 22.3 1.0
CD1 A:LEU379 4.9 29.1 1.0
O A:LEU145 4.9 23.4 1.0

Iodine binding site 2 out of 13 in 6an0

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Iodine binding site 2 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I508

b:28.1
occ:0.80
 ND2 A:ASN47 3.6 30.3 0.6
ND2 A:ASN47 3.7 30.2 0.4
CA A:ALA44 4.0 30.2 1.0
CG A:ASP36 4.1 36.5 1.0
CB A:ALA44 4.2 31.7 1.0
CB A:ASN47 4.2 27.8 0.6
OD2 A:ASP36 4.2 31.7 1.0
CE1 A:TYR48 4.2 28.1 1.0
CB A:ASP36 4.2 25.4 1.0
CB A:ASN47 4.2 28.3 0.4
CG A:GLU40 4.4 40.3 1.0
CG A:ASN47 4.4 34.7 0.6
OD1 A:ASP36 4.4 33.5 1.0
CG A:ASN47 4.5 33.7 0.4
CB A:GLU40 4.6 34.9 1.0
CD1 A:TYR48 4.7 27.5 1.0
N A:ALA44 4.8 29.8 1.0
O A:HOH683 5.0 32.7 1.0

Iodine binding site 3 out of 13 in 6an0

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Iodine binding site 3 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I509

b:49.8
occ:0.46
 ND2 A:ASN6 3.3 42.6 1.0
NZ A:LYS311 3.3 60.4 1.0
N A:ASP307 3.7 39.5 1.0
CG A:ASP307 3.7 61.3 1.0
CB A:ASN6 3.8 48.7 1.0
OD2 A:ASP307 3.8 70.9 1.0
CA A:ASN6 3.9 49.4 1.0
OD1 A:ASP307 3.9 67.5 1.0
CD2 A:LEU306 4.0 37.6 1.0
CD A:LYS311 4.0 43.4 1.0
CG A:ASN6 4.0 49.7 1.0
CA A:LEU306 4.0 31.1 1.0
CE A:LYS311 4.2 56.6 1.0
CB A:ASP307 4.2 49.4 1.0
C A:LEU306 4.4 42.0 1.0
C A:ASN6 4.4 49.8 1.0
O A:VAL305 4.5 32.8 1.0
CB A:LEU306 4.6 26.4 1.0
CA A:ASP307 4.6 38.5 1.0
O A:PRO7 4.7 68.8 1.0
O A:ASN6 4.8 51.7 1.0
CG A:LEU306 4.9 34.6 1.0

Iodine binding site 4 out of 13 in 6an0

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Iodine binding site 4 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I510

b:41.1
occ:0.44
 OG A:SER262 3.2 28.5 0.6
O A:HOH843 3.2 42.0 1.0
OG A:SER233 3.5 44.8 1.0
N A:SER233 3.5 28.8 1.0
CA A:PRO232 3.9 28.2 1.0
CB A:PRO232 3.9 34.1 1.0
CA A:GLY259 4.1 31.9 1.0
CB A:SER262 4.2 26.5 0.4
C A:PRO232 4.2 25.4 1.0
N A:SER262 4.2 27.1 1.0
N A:GLY259 4.3 34.4 1.0
CB A:SER262 4.3 26.8 0.6
CB A:HIS258 4.4 25.7 1.0
C A:HIS258 4.5 37.0 1.0
CA A:SER262 4.5 26.8 0.4
CB A:SER233 4.5 34.7 1.0
CA A:SER262 4.5 26.3 0.6
CA A:SER233 4.6 30.2 1.0
O A:HIS258 4.6 37.9 1.0
C A:GLY259 4.8 29.7 1.0
C A:ASP261 4.8 27.2 1.0
O A:GLY259 4.9 29.9 1.0
O A:SER233 4.9 28.9 1.0

Iodine binding site 5 out of 13 in 6an0

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Iodine binding site 5 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I511

b:45.2
occ:0.79
 O A:HOH894 3.5 43.2 1.0
CB A:PHE413 3.9 41.4 1.0
CA A:PHE413 3.9 36.9 1.0
CA A:GLU408 4.0 37.8 1.0
CD1 A:PHE413 4.1 55.4 1.0
CG A:GLU408 4.1 52.8 1.0
N A:PHE413 4.2 28.1 1.0
CB A:GLU408 4.5 36.0 1.0
CG A:PHE413 4.5 46.5 1.0
O A:GLU408 4.5 35.6 1.0
CD A:LYS416 4.7 36.8 1.0
C A:LEU412 4.7 29.8 1.0
N A:LEU412 4.7 26.7 1.0
CA A:GLU411 4.8 46.1 1.0
C A:GLU408 4.8 41.8 1.0
N A:GLU408 4.8 28.6 1.0
O A:HOH703 4.9 33.9 1.0
C A:GLU411 4.9 42.2 1.0
O A:ALA407 4.9 31.6 1.0

Iodine binding site 6 out of 13 in 6an0

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Iodine binding site 6 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I512

b:43.5
occ:0.32
 ND2 A:ASN209 3.3 44.3 1.0
O A:HOH889 3.5 40.8 1.0
N A:ASN209 3.5 26.2 1.0
CG A:ASN209 3.6 37.6 1.0
OH A:TYR124 3.7 29.2 1.0
CB A:PRO126 3.9 28.6 1.0
CE2 A:TYR124 3.9 26.3 1.0
CB A:ASN209 4.0 34.1 1.0
CG2 A:VAL212 4.0 24.8 1.0
CA A:GLY208 4.0 26.1 1.0
CG A:PRO126 4.1 27.6 1.0
O A:HOH722 4.1 32.9 1.0
OD1 A:ASN209 4.2 32.3 1.0
O A:HOH849 4.2 45.5 1.0
C A:GLY208 4.3 26.3 1.0
CZ A:TYR124 4.3 29.0 1.0
CA A:ASN209 4.4 24.9 1.0
CA A:PRO126 4.4 26.6 1.0
CB A:VAL212 4.8 23.9 1.0
O A:HOH787 4.8 42.8 1.0

Iodine binding site 7 out of 13 in 6an0

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Iodine binding site 7 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I513

b:96.9
occ:0.52
 O A:HOH857 3.2 30.1 1.0
O A:HOH787 3.6 42.8 1.0
N A:ILE185 3.6 22.9 1.0
OE1 A:GLN186 3.8 25.3 1.0
CG1 A:ILE185 3.9 21.7 1.0
CD1 A:ILE185 4.0 22.4 1.0
CA A:GLY184 4.1 27.6 1.0
CB A:ILE185 4.2 25.9 1.0
CB A:TYR211 4.3 25.1 1.0
C A:GLY184 4.4 21.7 1.0
CA A:ILE185 4.5 23.1 1.0
CG A:TYR211 4.6 34.0 1.0
CG A:PHE52 4.7 28.4 1.0
CD1 A:PHE52 4.7 30.1 1.0
CD A:GLN186 4.7 25.9 1.0
CD2 A:PHE52 4.7 39.0 1.0
CE1 A:PHE52 4.8 34.4 1.0
CE2 A:PHE52 4.8 44.3 1.0
CZ A:PHE52 4.9 32.3 1.0
NE2 A:GLN186 4.9 26.8 1.0

Iodine binding site 8 out of 13 in 6an0

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Iodine binding site 8 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I514

b:42.2
occ:0.32
 N A:ILE163 3.2 28.4 1.0
O A:HOH706 3.3 38.4 1.0
OE1 A:GLU66 3.6 40.6 1.0
CA A:ASN162 3.6 29.0 1.0
ND2 A:ASN162 3.8 43.3 1.0
CD A:GLU66 3.8 43.0 1.0
CD1 A:LEU168 3.9 30.1 1.0
C A:ASN162 3.9 27.4 1.0
O A:HOH724 4.0 40.0 1.0
O A:ILE163 4.0 31.5 1.0
CB A:ASN162 4.0 32.2 1.0
CB A:GLU66 4.1 27.7 1.0
CB A:ILE163 4.1 27.3 1.0
CA A:ILE163 4.2 23.9 1.0
CG A:GLU66 4.2 35.5 1.0
O A:GLY161 4.4 36.1 1.0
CG1 A:ILE163 4.4 30.5 1.0
CG A:ASN162 4.4 39.4 1.0
O A:HOH913 4.4 45.3 1.0
OE2 A:GLU66 4.4 33.2 1.0
CE A:LYS181 4.5 29.8 1.0
NZ A:LYS181 4.6 32.9 1.0
C A:ILE163 4.6 34.3 1.0
N A:ASN162 4.8 32.9 1.0

Iodine binding site 9 out of 13 in 6an0

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Iodine binding site 9 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I515

b:40.9
occ:0.44
 NE2 A:GLN80 3.7 58.7 1.0
O A:HOH663 3.7 49.5 1.0
CG A:GLN80 3.8 44.0 1.0
CA A:ALA81 4.0 34.1 1.0
O A:GLN80 4.1 26.8 1.0
N A:ALA81 4.2 33.8 1.0
CB A:MET84 4.2 28.8 1.0
C A:GLN80 4.2 34.1 1.0
CD A:GLN80 4.3 59.0 1.0
CE A:MET84 4.3 41.9 1.0
CG A:MET84 4.4 41.6 1.0
CB A:ALA81 4.5 29.0 1.0
CB A:GLN80 4.7 31.4 1.0

Iodine binding site 10 out of 13 in 6an0

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Iodine binding site 10 out of 13 in the Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I516

b:40.3
occ:0.52
 O A:HOH614 3.5 46.7 1.0

Reference:

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of Histidinol Dehydrogenase From Elizabethkingia Anophelis To Be Published.
Page generated: Sun Aug 11 22:29:03 2024

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