Atomistry » Iodine » PDB 6axy-6doe » 6bz5
Atomistry »
  Iodine »
    PDB 6axy-6doe »
      6bz5 »

Iodine in PDB 6bz5: Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7

Enzymatic activity of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7

All present enzymatic activity of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7:
1.14.13.1;

Protein crystallography data

The structure of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7, PDB code: 6bz5 was solved by R.A.P.Nagem, D.M.A.Costa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.81 / 2.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.615, 98.076, 130.136, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 23.4

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iodine atom in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 (pdb code 6bz5). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 14 binding sites of Iodine where determined in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7, PDB code: 6bz5:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 1 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I501

b:29.9
occ:0.50
 I A:IOD501 0.0 29.9 0.5
I A:IOD501 1.0 33.1 0.5
NE2 A:GLN135 3.3 36.0 1.0
OG1 A:THR134 3.7 36.7 1.0
CB A:THR134 3.9 40.8 1.0
CG A:GLN135 4.0 31.4 1.0
CD A:GLN135 4.2 34.0 1.0
O A:HOH666 4.3 56.0 1.0
CG2 A:THR134 4.7 31.4 1.0
O A:THR134 4.7 36.7 1.0
C A:THR134 4.9 37.6 1.0

Iodine binding site 2 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 2 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I501

b:33.1
occ:0.50
 I A:IOD501 0.0 33.1 0.5
I A:IOD501 1.0 29.9 0.5
OG1 A:THR134 3.6 36.7 1.0
CB A:THR134 3.9 40.8 1.0
NE2 A:GLN135 4.3 36.0 1.0
CG2 A:THR134 4.4 31.4 1.0
CG A:GLN135 4.7 31.4 1.0
O A:HOH666 4.9 56.0 1.0

Iodine binding site 3 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 3 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I502

b:43.1
occ:0.48
 I A:IOD502 0.0 43.1 0.5
I A:IOD502 2.6 52.5 0.5
O3 B:GOL506 3.5 38.5 0.9
N B:GLY44 3.6 38.8 1.0
CG A:PRO259 4.1 46.8 1.0
CB A:PRO259 4.1 36.6 1.0
N B:PHE43 4.1 53.3 1.0
CB B:PHE43 4.2 40.0 1.0
CA B:GLY44 4.2 39.6 1.0
CB B:PRO259 4.2 41.9 1.0
C3 B:GOL506 4.2 39.9 0.9
CG1 B:VAL261 4.3 32.5 1.0
C B:PHE43 4.4 45.0 1.0
CA B:PHE43 4.5 48.9 1.0
CD2 B:PHE43 4.9 38.1 1.0
O2 B:GOL506 4.9 49.5 0.9
C B:ALA42 5.0 53.7 1.0

Iodine binding site 4 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 4 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I502

b:52.5
occ:0.52
 I A:IOD502 0.0 52.5 0.5
I A:IOD502 2.6 43.1 0.5
O2 A:EDO515 3.4 37.2 1.0
N A:GLY44 3.8 40.7 1.0
CB B:PRO259 4.1 41.9 1.0
CB A:PRO259 4.2 36.6 1.0
CG B:PRO259 4.2 46.9 1.0
C2 A:EDO515 4.3 35.0 1.0
CB A:PHE43 4.3 44.5 1.0
CA A:GLY44 4.3 34.3 1.0
CG1 A:VAL261 4.4 34.0 1.0
CD2 A:PHE43 4.4 39.9 1.0
C A:PHE43 4.8 41.9 1.0
CG A:PHE43 4.9 41.9 1.0
CG A:PRO259 4.9 46.8 1.0
CA A:PHE43 5.0 44.5 1.0
C1 A:EDO515 5.0 48.9 1.0

Iodine binding site 5 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 5 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I503

b:49.2
occ:0.44
 NH1 A:ARG365 3.5 34.8 1.0
CZ3 A:TRP404 3.7 41.8 1.0
CG A:ARG365 3.8 36.1 1.0
CD A:ARG365 3.8 37.4 1.0
CE3 A:TRP404 3.9 40.0 1.0
CB A:ARG365 4.0 34.6 1.0
CA A:ARG365 4.4 38.1 1.0
ND1 A:HIS408 4.4 47.3 1.0
CE1 A:HIS408 4.5 49.6 1.0
CZ A:ARG365 4.5 34.9 1.0
NE A:ARG365 4.7 36.3 1.0
O A:HOH739 4.8 52.4 1.0
CH2 A:TRP404 4.9 35.8 1.0

Iodine binding site 6 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 6 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I504

b:52.9
occ:0.56
 N B:ALA289 3.8 39.1 1.0
O A:HOH623 3.9 41.6 1.0
CB B:PRO288 4.0 39.0 1.0
CE A:MET194 4.0 44.5 0.8
CA B:PRO288 4.3 40.4 1.0
CG A:ARG233 4.4 51.5 1.0
OD2 A:ASP74 4.4 55.3 1.0
C B:PRO288 4.5 38.4 1.0
CB B:ALA289 4.5 35.0 1.0
CG2 A:VAL232 4.5 35.4 1.0
O A:HOH709 4.5 43.6 1.0
NE A:ARG233 4.5 53.8 1.0
CA B:ALA289 4.6 38.0 1.0
CB A:HIS110 4.7 31.3 1.0
O A:HOH718 4.8 38.3 1.0
CD A:ARG233 4.8 55.9 1.0
O A:HOH863 4.9 60.0 1.0
CB A:VAL232 4.9 37.6 1.0
SD A:MET194 5.0 41.3 0.2
O A:HOH872 5.0 62.2 1.0

Iodine binding site 7 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 7 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I505

b:55.5
occ:0.41
 O A:HOH889 3.3 53.9 1.0
N A:GLU263 3.5 33.9 1.0
O B:HOH648 3.6 40.5 1.0
CB A:ARG262 3.8 34.3 1.0
CA B:PHE43 3.8 48.9 1.0
CA A:ARG262 3.9 33.8 1.0
O A:HOH699 4.0 40.2 1.0
CD1 B:PHE43 4.2 40.8 1.0
CB A:GLU263 4.2 33.6 1.0
O B:ALA42 4.2 55.6 1.0
N B:PHE43 4.2 53.3 1.0
C A:ARG262 4.2 38.1 1.0
CB B:PHE43 4.3 40.0 1.0
C B:ALA42 4.3 53.7 1.0
CA A:GLU263 4.4 36.2 1.0
NH1 B:ARG111 4.5 55.1 1.0
CG A:GLU263 4.5 37.4 1.0
CG2 B:VAL46 4.6 41.2 1.0
O B:HOH751 4.7 48.2 1.0
CG B:PHE43 4.7 39.9 1.0
C B:PHE43 4.9 45.0 1.0
O A:GLU263 4.9 32.1 1.0
N B:ALA42 4.9 53.6 1.0
O B:PHE43 5.0 38.3 1.0

Iodine binding site 8 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 8 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I506

b:49.1
occ:0.35
 O1 A:EDO523 3.3 54.2 0.9
NH2 A:ARG169 3.6 31.7 1.0
CE A:LYS165 3.7 60.9 1.0
CD A:PRO183 3.8 37.4 1.0
CA A:LYS165 4.0 43.7 1.0
CG1 A:VAL182 4.2 44.8 1.0
C1 A:EDO523 4.3 43.2 0.9
NZ A:LYS165 4.3 66.9 1.0
C A:LYS165 4.3 44.1 1.0
CA A:VAL182 4.4 41.9 1.0
CB A:LYS165 4.4 42.8 1.0
CB A:VAL182 4.4 37.2 1.0
O A:GLN181 4.5 45.0 1.0
O A:SER166 4.6 36.9 1.0
O A:LYS165 4.6 42.1 1.0
CG A:LYS165 4.6 44.1 1.0
O A:ILE164 4.7 32.9 1.0
C2 A:EDO523 4.7 45.5 0.9
CG A:PRO183 4.7 38.8 1.0
CD A:LYS165 4.8 54.4 1.0
CZ A:ARG169 4.8 35.6 1.0
N A:SER166 4.8 31.8 1.0
N A:PRO183 5.0 37.1 1.0

Iodine binding site 9 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 9 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I507

b:81.0
occ:0.42
 ND2 A:ASN390 3.5 41.6 1.0
OE1 A:GLN392 3.6 43.5 0.5
OD1 A:ASN390 3.9 47.4 1.0
CG A:ASN390 4.1 48.3 1.0
CD A:GLN392 4.5 43.5 0.5
CB A:GLN392 4.8 45.0 0.5
CB A:GLN392 4.8 45.0 0.5
CG A:GLN392 4.9 44.4 0.5

Iodine binding site 10 out of 14 in 6bz5

Go back to Iodine Binding Sites List in 6bz5
Iodine binding site 10 out of 14 in the Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Structure and Mechanism of Salicylate Hydroxylase From Pseudomonas Putida G7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I501

b:47.4
occ:0.69
 O B:HOH756 3.3 49.9 1.0
O B:HOH631 3.7 40.3 1.0
N A:ALA289 3.7 37.2 1.0
CD B:ARG233 3.8 56.3 1.0
O B:HOH749 4.0 52.4 1.0
CG B:ARG233 4.0 49.8 1.0
CE B:MET194 4.1 49.5 1.0
CB A:PRO288 4.2 44.4 1.0
CB A:ALA289 4.4 38.0 1.0
CA A:PRO288 4.4 38.7 1.0
CA A:ALA289 4.4 36.1 1.0
NH1 B:ARG233 4.4 52.7 1.0
CB B:HIS110 4.4 39.6 1.0
C A:PRO288 4.5 34.5 1.0
CG2 B:VAL232 4.7 40.0 1.0
O B:HOH635 4.9 39.2 1.0
O B:HOH605 4.9 51.0 1.0
NE B:ARG233 5.0 57.1 1.0

Reference:

D.M.A.Costa, S.V.Gomez, S.S.Araujo, R.B.Alves, A.C.Hengge, R.A.P.Nagem, T.A.S.Brandao. Structure and Mechanism of Salicylate Hydroxylase To Be Published.
Page generated: Sun Aug 11 22:46:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy