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Iodine in PDB 6dp3: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
Enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
All present enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C:
3.1.26.4;
3.1.26.4;
Protein crystallography data
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C, PDB code: 6dp3
was solved by
N.L.Samara,
W.Yang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.09 / 1.46 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 81.530, 38.108, 61.723, 90.00, 96.04, 90.00 |
| R / Rfree (%) | 17.1 / 19.8 |
Other elements in 6dp3:
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Potassium | (K) | 3 atoms |
Iodine Binding Sites:
The binding sites of Iodine atom in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
(pdb code 6dp3). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C, PDB code: 6dp3:
Jump to Iodine binding site number: 1; 2; 3;
In total 3 binding sites of Iodine where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C, PDB code: 6dp3:
Jump to Iodine binding site number: 1; 2; 3;
Iodine binding site 1 out of 3 in 6dp3
Go back to
Iodine Binding Sites List in 6dp3
Iodine binding site 1 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 2 out of 3 in 6dp3
Go back to
Iodine Binding Sites List in 6dp3
Iodine binding site 2 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 3 out of 3 in 6dp3
Go back to
Iodine Binding Sites List in 6dp3
Iodine binding site 3 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 10 Mm MG2+ and 75 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Reference:
N.L.Samara,
W.Yang.
Cation Trafficking Propels Rna Hydrolysis. Nat. Struct. Mol. Biol. V. 25 715 2018.
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
Page generated: Fri Aug 8 21:16:00 2025
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
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