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Iodine in PDB 6dpd: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
All present enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C:
3.1.26.4;
3.1.26.4;
Protein crystallography data
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C, PDB code: 6dpd
was solved by
N.L.Samara,
W.Yang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.84 / 1.46 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 81.324, 37.988, 61.323, 90.00, 96.32, 90.00 |
| R / Rfree (%) | 15.1 / 17.3 |
Other elements in 6dpd:
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C also contains other interesting chemical elements:
| Potassium | (K) | 1 atom |
| Manganese | (Mn) | 6 atoms |
Iodine Binding Sites:
The binding sites of Iodine atom in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
(pdb code 6dpd). This binding sites where shown within
5.0 Angstroms radius around Iodine atom.
In total 5 binding sites of Iodine where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C, PDB code: 6dpd:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Iodine where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C, PDB code: 6dpd:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;
Iodine binding site 1 out of 5 in 6dpd
Go back to
Iodine Binding Sites List in 6dpd
Iodine binding site 1 out
of 5 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 1 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 2 out of 5 in 6dpd
Go back to
Iodine Binding Sites List in 6dpd
Iodine binding site 2 out
of 5 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 2 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 3 out of 5 in 6dpd
Go back to
Iodine Binding Sites List in 6dpd
Iodine binding site 3 out
of 5 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 3 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 4 out of 5 in 6dpd
Go back to
Iodine Binding Sites List in 6dpd
Iodine binding site 4 out
of 5 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 4 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Iodine binding site 5 out of 5 in 6dpd
Go back to
Iodine Binding Sites List in 6dpd
Iodine binding site 5 out
of 5 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iodine with other atoms in the I binding
site number 5 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 16 Mm MN2+ and 200 Mm K+ For 40 S at 21 C within 5.0Å range:
|
Reference:
N.L.Samara,
W.Yang.
Cation Trafficking Propels Rna Hydrolysis. Nat. Struct. Mol. Biol. V. 25 715 2018.
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
Page generated: Sun Aug 11 23:02:26 2024
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
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