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Iodine in PDB 6i1m: Secreted Type 1 Cystatin From Fasciola Hepatica

Protein crystallography data

The structure of Secreted Type 1 Cystatin From Fasciola Hepatica, PDB code: 6i1m was solved by M.Busa, P.Rezacova, P.Pachl, S.Stefanic, M.Mares, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.67 / 1.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 64.878, 67.177, 44.493, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 26.2

Iodine Binding Sites:

The binding sites of Iodine atom in the Secreted Type 1 Cystatin From Fasciola Hepatica (pdb code 6i1m). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Secreted Type 1 Cystatin From Fasciola Hepatica, PDB code: 6i1m:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 6i1m

Go back to Iodine Binding Sites List in 6i1m
Iodine binding site 1 out of 2 in the Secreted Type 1 Cystatin From Fasciola Hepatica


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Secreted Type 1 Cystatin From Fasciola Hepatica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I101

b:21.4
occ:1.00
N A:ALA52 3.7 25.8 1.0
CB A:ALA52 3.9 25.1 1.0
CB A:VAL51 3.9 23.2 1.0
CG2 A:VAL51 4.0 25.1 1.0
CA A:ALA52 4.3 24.9 1.0
O A:ALA52 4.7 26.1 1.0
CG1 A:VAL51 4.7 24.2 1.0
CE1 A:PHE75 4.7 20.3 1.0
C A:VAL51 4.8 23.8 1.0
C A:ALA52 4.8 25.4 1.0
CZ A:PHE75 4.8 20.4 1.0
CA A:VAL51 4.9 24.0 1.0

Iodine binding site 2 out of 2 in 6i1m

Go back to Iodine Binding Sites List in 6i1m
Iodine binding site 2 out of 2 in the Secreted Type 1 Cystatin From Fasciola Hepatica


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Secreted Type 1 Cystatin From Fasciola Hepatica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I102

b:30.0
occ:0.30
O A:HOH273 2.0 31.4 0.5
NH1 A:ARG92 3.5 33.5 0.5
N A:ARG92 3.7 26.1 1.0
CZ A:ARG92 3.9 32.3 0.5
CB A:ARG92 4.0 27.9 0.5
NH2 A:ARG92 4.1 31.7 0.5
CB A:ARG92 4.2 25.9 0.5
CG2 A:THR91 4.2 32.5 1.0
CA A:THR91 4.3 26.8 1.0
CG A:ARG92 4.3 26.4 0.5
CA A:ARG92 4.5 26.4 0.5
C A:THR91 4.5 25.1 1.0
CA A:ARG92 4.5 25.6 0.5
NE A:ARG92 4.6 29.1 0.5
CG A:ARG92 4.7 29.5 0.5
CB A:THR91 4.8 28.2 1.0
O A:PRO90 4.9 25.1 1.0
O A:ARG92 4.9 27.9 1.0

Reference:

M.Busa, P.Rezacova, P.Pachl, S.Stefanic, M.Mares. Secreted Type 1 Cystatin From Fasciola Hepatica To Be Published.
Page generated: Sun Dec 13 19:44:11 2020

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