Iodine in PDB 6k3j: Solution Structure of APOBEC3G-CD2 with Ssdna, Product A

The structure of Solution Structure of APOBEC3G-CD2 with Ssdna, Product A also contains other interesting chemical elements:

Zinc

(Zn)

20 atoms

The binding sites of Iodine atom in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product A (pdb code 6k3j). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product A, PDB code: 6k3j:

Iodine binding site 1 out of 1 in the Solution Structure of APOBEC3G-CD2 with Ssdna, Product A


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Solution Structure of APOBEC3G-CD2 with Ssdna, Product A within 5.0Å range: probe atom residue distance (Å) B Occ B:I390 b:0.0 occ:1.00 I5 B:5IU390 0.0 0.0 1.0 C5 B:5IU390 2.1 0.0 1.0 HE A:ARG256 2.3 0.0 1.0 HH11 A:ARG256 2.6 0.0 1.0 C6 B:5IU390 3.0 0.0 1.0 H6 B:5IU390 3.0 0.0 1.0 C4 B:5IU390 3.1 0.0 1.0 NE A:ARG256 3.2 0.0 1.0 O4 B:5IU390 3.3 0.0 1.0 NH1 A:ARG256 3.4 0.0 1.0 C5 B:DA391 3.5 0.0 1.0 C6 B:DA391 3.6 0.0 1.0 CZ A:ARG256 3.7 0.0 1.0 C4 B:DA391 3.8 0.0 1.0 N7 B:DA391 3.8 0.0 1.0 N1 B:DA391 4.0 0.0 1.0 N6 B:DA391 4.0 0.0 1.0 H62 B:DA391 4.2 0.0 1.0 HH12 A:ARG256 4.2 0.0 1.0 HD21 A:LEU253 4.2 0.0 1.0 C2 B:DA391 4.2 0.0 1.0 N3 B:DA391 4.3 0.0 1.0 C8 B:DA391 4.3 0.0 1.0 N9 B:DA391 4.3 0.0 1.0 N1 B:5IU390 4.3 0.0 1.0 N3 B:5IU390 4.3 0.0 1.0 CD A:ARG256 4.4 0.0 1.0 HD3 A:ARG256 4.4 0.0 1.0 H61 B:DA391 4.5 0.0 1.0 HD23 A:LEU253 4.5 0.0 1.0 HG2 A:ARG256 4.5 0.0 1.0 CD2 A:LEU253 4.7 0.0 1.0 HD22 A:LEU253 4.8 0.0 1.0 C2 B:5IU390 4.9 0.0 1.0 H2' B:5IU390 4.9 0.0 1.0 CG A:ARG256 4.9 0.0 1.0 H2 B:DA391 5.0 0.0 1.0 H8 B:DA391 5.0 0.0 1.0

X.Yan, W.Lan, C.Wang, C.Cao. Structural Investigations on the Interactions Between Cytidine Deaminase Human APOBEC3G and Dna. Chem Asian J V. 14 2235 2019.
ISSN: ESSN 1861-471X
PubMed: 31116511
DOI: 10.1002/ASIA.201900480