Iodine in PDB 6k9o: Crystal Structure Analysis of Protein

Enzymatic activity of Crystal Structure Analysis of Protein

All present enzymatic activity of Crystal Structure Analysis of Protein:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure Analysis of Protein, PDB code: 6k9o was solved by C.Li, Q.Wan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.23 / 1.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.960, 59.334, 69.845, 90.00, 90.00, 90.00
R / Rfree (%) 12.1 / 13

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure Analysis of Protein (pdb code 6k9o). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure Analysis of Protein, PDB code: 6k9o:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 6k9o

Go back to Iodine Binding Sites List in 6k9o
Iodine binding site 1 out of 2 in the Crystal Structure Analysis of Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure Analysis of Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I202

b:8.1
occ:1.00
H A:ASN82 2.9 9.1 1.0
HB2 A:LEU84 3.3 9.1 1.0
HG21 A:ILE129 3.3 12.5 1.0
HB3 A:ARG81 3.4 9.5 1.0
HG12 A:ILE129 3.4 10.9 1.0
HA A:ARG81 3.5 9.3 1.0
N A:ASN82 3.6 7.6 1.0
HG2 A:ARG81 3.8 10.2 1.0
HD13 A:LEU84 3.8 10.5 1.0
CB A:ARG81 4.0 7.9 1.0
CA A:ARG81 4.1 7.7 1.0
HB2 A:ASN82 4.1 10.7 1.0
CB A:LEU84 4.2 7.6 1.0
HA A:ASN82 4.2 9.8 1.0
CG2 A:ILE129 4.2 10.4 1.0
H A:LEU84 4.3 9.2 1.0
C A:ARG81 4.3 7.8 1.0
CG1 A:ILE129 4.4 9.1 1.0
HA A:LEU84 4.4 8.7 1.0
CG A:ARG81 4.4 8.5 1.0
HG23 A:ILE129 4.4 12.5 1.0
CA A:ASN82 4.4 8.2 1.0
N A:LEU84 4.5 7.7 1.0
HD22 A:LEU84 4.6 10.3 1.0
CA A:LEU84 4.6 7.3 1.0
CD1 A:LEU84 4.6 8.8 1.0
HG13 A:ILE129 4.7 10.9 1.0
HH11 A:ARG81 4.7 13.7 1.0
HB3 A:LEU84 4.8 9.1 1.0
CB A:ASN82 4.8 8.9 1.0
CB A:ILE129 4.9 9.2 1.0
HD12 A:LEU84 4.9 10.5 1.0
HB2 A:ARG81 4.9 9.5 1.0
HG22 A:ILE129 4.9 12.5 1.0
HD3 A:ARG81 4.9 11.3 1.0
CG A:LEU84 4.9 8.0 1.0

Iodine binding site 2 out of 2 in 6k9o

Go back to Iodine Binding Sites List in 6k9o
Iodine binding site 2 out of 2 in the Crystal Structure Analysis of Protein


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure Analysis of Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I203

b:0.2
occ:1.00
H A:SER146 2.8 9.4 1.0
HG A:SER146 3.3 11.1 0.8
HB2 A:ARG145 3.4 9.1 1.0
HA A:ARG145 3.5 9.2 1.0
O A:HOH342 3.5 9.2 1.0
O A:HOH410 3.6 10.5 1.0
H A:SER147 3.6 9.7 1.0
N A:SER146 3.6 7.8 1.0
OG A:SER146 3.8 9.2 0.8
CB A:ARG145 4.1 7.6 1.0
O A:HOH304 4.1 14.1 1.0
CA A:ARG145 4.1 7.7 1.0
N A:SER147 4.2 8.1 1.0
HB2 A:SER146 4.2 10.8 0.2
HB2 A:SER147 4.3 10.3 1.0
HB3 A:ARG145 4.3 9.1 1.0
C A:ARG145 4.4 7.5 1.0
HG A:SER147 4.5 10.5 1.0
CA A:SER146 4.5 8.6 1.0
O A:HOH572 4.6 15.0 1.0
C A:SER146 4.7 8.4 1.0
CB A:SER146 4.8 9.0 1.0
CB A:SER147 5.0 8.6 1.0

Reference:

Q.Wan, C.Li, Q.Wan. N/A N/A.
Page generated: Sun Dec 13 19:44:32 2020

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