Iodine in PDB 6kfd: Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate

The structure of Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate, PDB code: 6kfd was solved by F.Motojima, A.Izumi, Y.Asano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.31 / 1.55
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	58.091, 58.091, 225.456, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 17.9

The binding sites of Iodine atom in the Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate (pdb code 6kfd). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate, PDB code: 6kfd:

Iodine binding site 1 out of 1 in the Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis, Complexed with Iodoacetate within 5.0Å range: probe atom residue distance (Å) B Occ A:I201 b:36.7 occ:0.59 I1 A:04E201 0.0 36.7 0.6 CH3 A:04E201 2.2 29.2 0.6 C1 A:04E201 3.1 27.7 0.6 O1 A:04E201 3.5 25.7 0.6 OXT A:04E201 3.9 22.6 0.6 NH1 A:ARG38 4.0 16.3 1.0 CD1 A:LEU77 4.0 17.3 1.0 CG A:PHE67 4.2 15.5 1.0 CD2 A:PHE67 4.3 16.3 1.0 CD1 A:PHE67 4.3 15.5 1.0 CE2 A:PHE67 4.3 16.8 1.0 CE1 A:PHE67 4.4 15.8 1.0 CZ A:PHE67 4.4 16.5 1.0 CB A:ALA54 4.4 13.0 1.0 CB A:ALA75 4.4 15.1 1.0 CD2 A:LEU77 4.4 17.4 1.0 CG A:LEU77 4.5 16.9 1.0 CE1 A:TYR40 4.6 15.6 1.0 OH A:TYR40 4.6 18.8 1.0 O A:HOH479 4.7 37.9 1.0 CB A:PHE67 4.8 15.5 1.0 O A:HOH519 4.9 23.1 1.0 CZ A:ARG38 4.9 16.1 1.0 CZ A:PHE90 5.0 22.3 1.0

F.Motojima, A.Izumi, Z.Zhai, T.Yamaguchi, S.Shichida, S.Nakano, M.Dadashipour, Y.Asano. Functional and Crystallographic Analysis of Hydroxynitrile Lyase From the Millipede, Chamberlinius Hualienensis To Be Published.