Iodine in PDB 6mqa: Structure of Hiv-1 Ca P207S

The structure of Structure of Hiv-1 Ca P207S, PDB code: 6mqa was solved by S.S.Smaga, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.33 / 3.20
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	90.237, 90.237, 57.534, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 21.9

The structure of Structure of Hiv-1 Ca P207S also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Iodine atom in the Structure of Hiv-1 Ca P207S (pdb code 6mqa). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Structure of Hiv-1 Ca P207S, PDB code: 6mqa:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the Structure of Hiv-1 Ca P207S


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Hiv-1 Ca P207S within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:0.2 occ:1.00 CG A:MET144 3.7 82.9 1.0 SD A:MET144 4.4 99.5 1.0 O A:MET144 4.4 75.6 1.0 CE1 A:TYR145 4.5 54.8 1.0 CD1 A:TYR145 4.8 64.1 1.0

Iodine binding site 2 out of 3 in the Structure of Hiv-1 Ca P207S


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Hiv-1 Ca P207S within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:88.3 occ:1.00 N A:GLY61 3.7 43.0 1.0 CG A:GLN63 4.0 50.0 1.0 CD A:GLN63 4.0 56.1 1.0 NE2 A:GLN63 4.1 45.6 1.0 CA A:GLY60 4.2 52.8 1.0 C A:GLY60 4.5 54.5 1.0 OE1 A:GLN63 4.6 43.8 1.0 CA A:GLY61 4.6 51.2 1.0 O A:VAL59 4.9 67.8 1.0

Iodine binding site 3 out of 3 in the Structure of Hiv-1 Ca P207S


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of Hiv-1 Ca P207S within 5.0Å range: probe atom residue distance (Å) B Occ A:I303 b:82.7 occ:1.00 O A:PRO157 3.0 0.1 1.0 C A:GLY156 3.7 88.2 1.0 N A:PRO157 3.8 88.1 1.0 CA A:GLY156 3.9 89.3 1.0 C A:PRO157 3.9 85.2 1.0 CD A:PRO157 4.0 94.3 1.0 O A:GLY156 4.2 87.3 1.0 CB A:GLU159 4.4 74.1 1.0 N A:GLU159 4.4 87.3 1.0 CG A:PRO157 4.5 0.0 1.0 CA A:PRO157 4.5 69.5 1.0 CA A:GLU159 4.6 64.7 1.0 C A:LYS158 4.7 80.6 1.0 N A:LYS158 4.8 62.5 1.0 N A:GLY156 4.9 75.7 1.0

S.S.Smaga, C.Xu, B.J.Summers, K.M.Digianantonio, J.R.Perilla, Y.Xiong. Mxb Restricts Hiv-1 By Targeting the Tri-Hexamer Interface of the Viral Capsid. Structure V. 27 1234 2019.
ISSN: ISSN 0969-2126
PubMed: 31155311
DOI: 10.1016/J.STR.2019.04.015