Iodine in PDB 6mqp: Structure of Hiv-1 Ca T210K

The structure of Structure of Hiv-1 Ca T210K, PDB code: 6mqp was solved by S.S.Smaga, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.43 / 3.30
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	91.767, 91.767, 57.216, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 24.1

The structure of Structure of Hiv-1 Ca T210K also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Iodine atom in the Structure of Hiv-1 Ca T210K (pdb code 6mqp). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Structure of Hiv-1 Ca T210K, PDB code: 6mqp:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Structure of Hiv-1 Ca T210K


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Hiv-1 Ca T210K within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:0.6 occ:1.00 H A:GLY61 3.1 70.0 1.0 HA2 A:GLY60 3.5 77.7 1.0 HG3 A:GLN63 3.6 78.2 1.0 N A:GLY61 3.9 57.9 1.0 HG2 A:GLN63 4.0 78.2 1.0 CG A:GLN63 4.1 64.6 1.0 HE21 A:GLN63 4.2 85.3 1.0 CD A:GLN63 4.2 69.4 1.0 NE2 A:GLN63 4.2 70.6 1.0 CA A:GLY60 4.3 64.2 1.0 HA3 A:GLY60 4.5 77.7 1.0 HA2 A:GLY61 4.6 95.9 1.0 HE22 A:GLN63 4.6 85.3 1.0 C A:GLY60 4.7 66.4 1.0 OE1 A:GLN63 4.7 59.6 1.0 CA A:GLY61 4.9 79.4 1.0 O A:VAL59 5.0 56.7 1.0

Iodine binding site 2 out of 2 in the Structure of Hiv-1 Ca T210K


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Hiv-1 Ca T210K within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:99.0 occ:1.00 H A:LYS158 2.8 1.0 1.0 HD2 A:PRO157 3.0 0.1 1.0 HA3 A:GLY156 3.1 0.2 1.0 HB2 A:GLU159 3.6 98.1 1.0 N A:LYS158 3.6 92.0 1.0 H A:GLU159 3.7 0.2 1.0 N A:GLU159 3.7 90.5 1.0 CD A:PRO157 3.8 0.6 1.0 HG2 A:PRO157 3.9 0.9 1.0 CA A:GLY156 3.9 0.7 1.0 C A:LYS158 3.9 72.3 1.0 C A:GLY156 4.0 0.8 1.0 N A:PRO157 4.0 0.1 1.0 CA A:LYS158 4.0 77.8 1.0 CB A:LYS158 4.1 75.5 1.0 HA A:GLU159 4.3 92.5 1.0 HA2 A:GLY156 4.3 0.2 1.0 CB A:GLU159 4.3 81.2 1.0 CA A:GLU159 4.3 76.6 1.0 CG A:PRO157 4.4 0.8 1.0 O A:LYS158 4.5 78.7 1.0 HD3 A:PRO157 4.6 0.1 1.0 O A:GLY156 4.6 0.3 1.0 C A:PRO157 4.7 92.1 1.0 HB3 A:GLU159 4.7 98.1 1.0 CA A:PRO157 4.9 0.6 1.0 H A:GLY156 4.9 0.2 1.0 N A:GLY156 5.0 0.6 1.0

S.S.Smaga, C.Xu, B.J.Summers, K.M.Digianantonio, J.R.Perilla, Y.Xiong. Mxb Restricts Hiv-1 By Targeting the Tri-Hexamer Interface of the Viral Capsid. Structure V. 27 1234 2019.
ISSN: ISSN 0969-2126
PubMed: 31155311
DOI: 10.1016/J.STR.2019.04.015