Iodine in PDB 6mtz: Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27

The structure of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27, PDB code: 6mtz was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.94 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.730, 66.740, 200.470, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 22.8

The structure of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 (pdb code 6mtz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 30 binding sites of Iodine where determined in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27, PDB code: 6mtz:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I604 b:48.8 occ:0.69 NZ A:LYS21 3.1 64.6 1.0 N A:CYS29 3.6 32.5 1.0 O A:HOH741 3.8 37.7 1.0 SG A:CYS29 3.9 29.6 1.0 CB A:CYS29 3.9 27.8 1.0 O A:ILE27 3.9 41.1 1.0 NE2 A:GLN28 4.3 51.7 1.0 CA A:GLN28 4.3 36.2 1.0 CA A:CYS29 4.4 31.0 1.0 C A:GLN28 4.4 37.7 1.0 CE A:LYS21 4.5 42.9 1.0 C A:ILE27 4.7 44.4 1.0 CD A:ARG186 4.7 20.5 1.0 NH1 A:ARG186 4.7 25.0 1.0 CD A:GLN28 4.9 54.7 1.0 CD A:LYS21 4.9 34.6 1.0 N A:GLN28 4.9 37.5 1.0

Iodine binding site 2 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I605 b:67.9 occ:0.47 O A:HOH876 3.2 42.6 1.0 N A:LYS25 3.5 35.5 1.0 CB A:LYS25 3.9 29.7 1.0 O A:PHE23 4.1 53.4 1.0 CA A:PHE24 4.3 37.0 1.0 CA A:LYS25 4.3 43.9 1.0 C A:PHE24 4.4 33.8 1.0 CD2 A:LEU132 4.6 38.6 1.0 CD1 A:PHE24 4.7 35.9 1.0 OD1 A:ASN26 4.9 80.7 1.0 N A:ASN26 4.9 45.5 1.0

Iodine binding site 3 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I606 b:62.9 occ:0.58 N A:PHE331 3.6 36.4 1.0 OG A:SER330 4.0 42.1 1.0 CB A:ALA40 4.1 50.0 1.0 CB A:PHE331 4.2 34.3 1.0 CA A:PHE331 4.4 39.3 1.0 CA A:SER330 4.4 41.3 1.0 CD2 A:PHE331 4.4 37.2 1.0 C A:SER330 4.5 44.3 1.0 CB A:SER330 4.7 39.7 1.0 N A:ASN332 4.8 33.8 1.0 C A:PHE331 4.8 34.7 1.0 CG A:PHE331 4.9 32.7 1.0

Iodine binding site 4 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I607 b:68.8 occ:0.59 ND2 A:ASN67 3.3 71.8 1.0 CG A:GLU70 3.7 76.3 1.0 CG A:ASN67 3.8 74.5 1.0 N A:ASN67 3.9 51.4 1.0 CB A:GLU70 4.0 67.0 1.0 OD1 A:ASN67 4.0 72.0 1.0 CG1 A:VAL38 4.1 32.7 1.0 CA A:LEU66 4.1 41.4 1.0 O A:GLY35 4.2 46.0 1.0 CB A:VAL38 4.3 42.1 1.0 O A:ASN65 4.3 44.3 1.0 CD2 A:LEU66 4.4 41.5 1.0 CA A:GLY35 4.4 49.4 1.0 OG A:SER39 4.4 60.5 1.0 C A:LEU66 4.6 48.8 1.0 CB A:LEU66 4.7 35.0 1.0 C A:GLY35 4.8 43.1 1.0 CB A:ASN67 4.9 72.4 1.0 CD A:GLU70 5.0 69.6 1.0 CA A:ASN67 5.0 58.9 1.0 CG2 A:VAL38 5.0 32.8 1.0

Iodine binding site 5 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I608 b:68.7 occ:0.47 O A:HOH866 3.5 44.1 1.0 N A:PHE124 3.7 29.6 1.0 CB A:GLU123 4.0 30.4 1.0 CA A:PHE124 4.0 23.3 1.0 C A:GLU123 4.0 34.4 1.0 NH1 A:ARG115 4.1 31.1 1.0 CB A:PHE124 4.2 22.5 1.0 O A:ILE120 4.3 24.1 1.0 CE A:LYS127 4.3 60.3 1.0 O A:GLU123 4.4 28.8 1.0 NH2 A:ARG115 4.5 41.7 1.0 CA A:GLU123 4.6 35.6 1.0 CZ A:ARG115 4.8 39.6 1.0 NZ A:LYS127 5.0 57.0 1.0

Iodine binding site 6 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I609 b:44.9 occ:0.55 O A:HOH866 3.2 44.1 1.0 NZ A:LYS127 3.8 57.0 1.0 CE A:LYS127 3.9 60.3 1.0 CE1 A:HIS128 4.1 48.1 1.0 NE2 A:HIS128 4.1 45.4 1.0 CD A:LYS127 4.4 55.1 1.0

Iodine binding site 7 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I610 b:39.7 occ:0.88 O B:HOH571 3.4 29.0 1.0 O A:HOH858 3.5 35.1 1.0 CB A:GLU161 4.0 27.2 1.0 CB A:PRO206 4.0 32.2 1.0 CG A:GLU161 4.1 30.9 1.0 CG A:PRO206 4.1 36.9 1.0 ND2 B:ASN232 4.3 30.1 1.0 CG2 B:THR229 4.5 26.2 1.0 CG2 A:VAL207 4.5 38.0 1.0 CD A:GLU161 4.5 33.1 1.0 OE2 A:GLU161 4.5 37.7 1.0

Iodine binding site 8 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I611 b:51.7 occ:0.41 O A:HOH836 3.3 30.1 1.0 NZ A:LYS189 3.7 30.7 1.0 ND2 A:ASN185 3.7 45.9 1.0 CE A:LYS189 3.7 28.3 1.0 OG A:SER174 3.9 25.7 0.6 CA A:SER174 4.0 25.5 0.4 CB A:SER174 4.0 26.3 0.4 CA A:SER174 4.0 25.3 0.6 CB A:SER174 4.1 26.1 0.6 O A:SER173 4.3 25.2 1.0 CB A:ARG178 4.3 24.3 1.0 I A:IOD612 4.4 40.7 0.5 CG A:ASN185 4.6 27.0 1.0 OD1 A:ASN185 4.6 33.1 1.0 O A:HOH715 4.7 45.1 1.0 O A:LEU176 4.7 26.8 1.0 N A:SER174 4.8 23.8 1.0 O A:HOH750 4.8 23.0 1.0 C A:SER173 4.8 23.1 1.0 CD A:ARG178 4.8 25.7 1.0 N A:ARG178 5.0 26.5 1.0

Iodine binding site 9 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I612 b:40.7 occ:0.52 O A:ILE9 2.9 61.4 1.0 O A:HOH833 3.5 37.7 1.0 O A:ILE170 3.5 22.6 1.0 CG2 A:ILE170 3.8 27.2 1.0 C A:ILE9 3.9 47.2 1.0 NZ A:LYS189 3.9 30.7 1.0 CE A:LYS189 4.0 28.3 1.0 CB A:ILE9 4.2 32.8 1.0 C A:ILE170 4.3 25.8 1.0 CE2 A:TYR14 4.3 27.0 1.0 O A:HOH715 4.4 45.1 1.0 I A:IOD611 4.4 51.7 0.4 CD1 A:ILE9 4.5 51.0 1.0 CA A:ASP10 4.5 33.0 1.0 CA A:THR171 4.5 27.7 1.0 CG1 A:ILE9 4.6 36.9 1.0 N A:ASP10 4.6 33.6 1.0 CA A:ILE9 4.7 37.6 1.0 N A:THR171 4.7 27.4 1.0 CD A:LYS189 4.7 25.7 1.0 CD2 A:TYR14 4.8 24.1 1.0

Iodine binding site 10 out of 30 in the Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 within 5.0Å range: probe atom residue distance (Å) B Occ A:I613 b:31.8 occ:0.72 O A:HOH786 3.3 27.3 1.0 O A:HOH863 3.4 47.3 1.0 CD B:ARG168 3.8 29.4 1.0 CA A:ASP231 4.0 38.1 1.0 CB A:SER234 4.2 31.0 1.0 CG A:MET230 4.2 28.2 1.0 N A:ASP231 4.4 30.9 1.0 O A:MET230 4.4 24.7 1.0 OG A:SER234 4.4 45.3 1.0 CB A:ASP231 4.4 26.5 1.0 C A:MET230 4.5 26.8 1.0 CG B:ARG168 4.5 29.6 1.0 O B:HOH628 4.7 48.9 1.0 CG A:GLU175 4.7 28.4 1.0 NE2 B:GLN172 4.8 20.9 1.0

J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Uncharacterized Protein From Helicobacter Pylori G27 To Be Published.