Iodine in PDB 6nfk: Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide

Enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide

All present enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide:
3.5.4.38;

Protein crystallography data

The structure of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide, PDB code: 6nfk was solved by K.Shi, K.Orellana, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.78 / 1.86
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 50.600, 50.600, 149.300, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide (pdb code 6nfk). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide, PDB code: 6nfk:

Iodine binding site 1 out of 1 in 6nfk

Go back to Iodine Binding Sites List in 6nfk
Iodine binding site 1 out of 1 in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Bound to Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I404

b:46.5
occ:0.82
 HB2 A:SER282 2.9 60.7 1.0
HA A:PRO283 3.1 49.4 1.0
H A:CYS284 3.2 61.3 1.0
HD12 A:ILE307 3.3 49.2 1.0
HZ3 A:TRP277 3.5 43.3 1.0
HD12 A:ILE279 3.5 52.0 1.0
HD13 A:LEU326 3.5 65.1 1.0
NE2 A:GLN255 3.6 53.2 1.0
OG A:SER282 3.6 59.8 1.0
CB A:SER282 3.7 50.6 1.0
HG23 A:ILE307 3.7 47.0 1.0
HG A:SER282 3.8 71.8 1.0
N A:CYS284 3.9 51.1 1.0
HD12 A:LEU326 3.9 65.1 1.0
HA A:SER282 3.9 44.2 1.0
CA A:PRO283 4.0 41.2 1.0
HB2 A:CYS284 4.0 0.5 1.0
CG A:GLN255 4.1 45.4 1.0
CD1 A:LEU326 4.1 54.2 1.0
HE3 A:TRP277 4.2 41.7 1.0
HG21 A:ILE279 4.2 39.4 1.0
CD1 A:ILE307 4.2 41.0 1.0
CZ3 A:TRP277 4.3 36.1 1.0
CD1 A:ILE279 4.3 43.3 1.0
CD A:GLN255 4.4 51.1 1.0
CA A:SER282 4.4 36.8 1.0
C A:PRO283 4.4 51.9 1.0
HB3 A:SER282 4.4 60.7 1.0
HD11 A:ILE307 4.4 49.2 1.0
HD11 A:ILE279 4.4 52.0 1.0
HD11 A:LEU326 4.5 65.1 1.0
HB3 A:PRO283 4.5 51.5 1.0
HD13 A:ILE307 4.6 49.2 1.0
CG2 A:ILE307 4.6 39.2 1.0
HB2 A:PRO283 4.6 51.5 1.0
HD13 A:ILE279 4.6 52.0 1.0
CB A:PRO283 4.6 43.0 1.0
HG22 A:ILE307 4.7 47.0 1.0
CE3 A:TRP277 4.7 34.7 1.0
CB A:CYS284 4.7 0.2 1.0
HD21 A:LEU326 4.8 67.5 1.0
CA A:CYS284 4.8 71.7 1.0
HB3 A:CYS284 4.9 0.5 1.0

Reference:

K.Shi, H.Aihara. Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G To Be Published.
Page generated: Sun Dec 13 19:46:45 2020

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