Iodine in PDB 6njv: C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine

The structure of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine, PDB code: 6njv was solved by C.J.Schiltz, A.Lee, E.A.Partlow, C.J.Hosford, J.S.Chappie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	64.39 / 2.30
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	64.392, 64.392, 63.388, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 27.4

The structure of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Iodine atom in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine (pdb code 6njv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine, PDB code: 6njv:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I701 b:44.9 occ:1.00 N A:ARG530 3.7 61.8 1.0 O A:HOH810 3.8 50.6 1.0 CA A:LEU528 3.9 60.2 1.0 C A:LEU528 3.9 57.9 1.0 CD A:PRO529 3.9 56.0 1.0 N A:PRO529 4.0 61.1 1.0 CB A:LEU528 4.0 59.1 1.0 CB A:ARG530 4.1 58.1 1.0 C A:ARG530 4.1 59.5 1.0 CA A:ARG530 4.1 62.7 1.0 N A:LEU531 4.3 56.5 1.0 O A:ARG530 4.4 60.4 1.0 O A:LEU528 4.4 58.5 1.0 CD2 A:LEU528 4.4 54.7 1.0 C A:PRO529 4.8 60.0 1.0 CG A:LEU528 4.9 55.9 1.0 CA A:PRO529 5.0 61.2 1.0 CA A:LEU531 5.0 58.2 1.0

Iodine binding site 2 out of 3 in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I702 b:61.4 occ:0.39 NH1 A:ARG560 3.2 47.6 1.0 NH2 A:ARG560 3.4 50.5 1.0 CZ A:ARG560 3.8 48.3 1.0 CD2 A:LEU557 3.8 46.4 1.0 CD1 A:LEU553 4.2 48.1 1.0 OG1 A:THR535 4.7 70.5 1.0 CG2 A:THR535 4.8 57.3 1.0 O A:HOH810 5.0 50.6 1.0

Iodine binding site 3 out of 3 in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Iodine within 5.0Å range: probe atom residue distance (Å) B Occ A:I703 b:93.1 occ:0.43 NE A:ARG533 3.8 88.6 1.0 CD A:ARG533 3.9 86.1 1.0 CZ A:ARG533 4.2 91.0 1.0 NH2 A:ARG533 4.7 85.6 1.0 NH1 A:ARG533 4.7 87.3 1.0

C.J.Schiltz, A.Lee, E.A.Partlow, C.J.Hosford, J.S.Chappie. Structural Characterization of Class 2 Old Family Nucleases Supports A Two-Metal Catalysis Mechanism For Cleavage. Nucleic Acids Res. V. 47 9448 2019.
ISSN: ESSN 1362-4962
PubMed: 31400118
DOI: 10.1093/NAR/GKZ703