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Iodine in PDB 6njw: C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum

Protein crystallography data

The structure of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum, PDB code: 6njw was solved by C.J.Schiltz, A.Lee, E.A.Partlow, C.J.Hosford, J.S.Chappie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.26 / 1.86
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 65.426, 65.426, 63.759, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 23.8

Other elements in 6njw:

The structure of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Platinum (Pt) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum (pdb code 6njw). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum, PDB code: 6njw:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 6njw

Go back to Iodine Binding Sites List in 6njw
Iodine binding site 1 out of 2 in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I702

b:0.2
occ:1.00
O A:PRO529 3.2 52.1 1.0
NH1 A:ARG525 3.3 77.0 1.0
O A:LEU528 3.3 45.5 1.0
C A:PRO529 3.4 57.4 1.0
N A:LEU531 3.5 43.3 1.0
CD2 A:LEU536 3.6 61.8 1.0
CA A:PRO529 3.8 57.2 1.0
CB A:LEU531 3.8 52.3 1.0
CD1 A:LEU536 3.8 62.6 1.0
N A:ARG530 4.0 56.2 1.0
CA A:LEU531 4.1 48.7 1.0
CG A:LEU536 4.2 60.5 1.0
O A:LEU531 4.2 55.3 1.0
C A:LEU528 4.3 47.2 1.0
CG A:ARG525 4.4 59.0 1.0
C A:ARG530 4.4 50.8 1.0
CG A:LEU531 4.4 55.0 1.0
CA A:ARG530 4.4 53.2 1.0
O A:ARG525 4.4 51.7 1.0
CZ A:ARG525 4.5 81.2 1.0
N A:PRO529 4.6 44.7 1.0
CB A:ARG525 4.6 53.3 1.0
CA A:ARG525 4.6 52.0 1.0
CD1 A:LEU531 4.7 45.1 1.0
C A:LEU531 4.7 54.6 1.0

Iodine binding site 2 out of 2 in 6njw

Go back to Iodine Binding Sites List in 6njw
Iodine binding site 2 out of 2 in the C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of C-Terminal Region of the Xanthomonas Campestris Pv. Campestris Old Protein Phased with Platinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I703

b:0.3
occ:1.00
O A:HOH807 3.2 45.4 1.0
NH2 A:ARG560 3.4 38.4 1.0
NH1 A:ARG560 3.5 38.2 1.0
CZ A:ARG560 3.9 42.5 1.0
CD1 A:LEU553 4.0 50.1 1.0
CD2 A:LEU557 4.1 38.5 1.0
OG1 A:THR535 4.6 51.4 1.0
CD A:ARG556 4.8 44.6 1.0

Reference:

C.J.Schiltz, A.Lee, E.A.Partlow, C.J.Hosford, J.S.Chappie. Structural Characterization of Class 2 Old Family Nucleases Supports A Two-Metal Catalysis Mechanism For Cleavage. Nucleic Acids Res. V. 47 9448 2019.
ISSN: ESSN 1362-4962
PubMed: 31400118
DOI: 10.1093/NAR/GKZ703
Page generated: Sun Dec 13 19:46:46 2020

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