Iodine in PDB 6qt8: Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum

The structure of Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum, PDB code: 6qt8 was solved by Y.L.Ahmed, M.Thoms, E.Hurt, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.54 / 2.33
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	85.853, 85.853, 156.302, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.2

The binding sites of Iodine atom in the Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum (pdb code 6qt8). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum, PDB code: 6qt8:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:I5109 b:51.1 occ:1.00 NE2 A:GLN4727 3.6 44.2 1.0 N A:GLY4955 3.7 68.8 1.0 N A:VAL4956 3.9 59.1 1.0 CA A:GLY4955 3.9 46.9 1.0 NH2 A:ARG4989 4.0 42.8 1.0 C A:GLY4955 4.2 53.5 1.0 CB A:PRO4953 4.2 55.5 1.0 N A:PRO4957 4.2 63.2 1.0 C A:VAL4956 4.3 54.7 1.0 CZ A:ARG4989 4.3 50.2 1.0 CA A:PRO4957 4.3 55.7 1.0 O A:VAL4956 4.4 51.2 1.0 NH1 A:ARG4989 4.4 37.5 1.0 CD A:PRO4957 4.5 50.7 1.0 N A:ASP4954 4.6 53.7 1.0 CB A:PRO4957 4.7 49.8 1.0 CD A:GLN4727 4.7 43.5 1.0 CA A:PRO4953 4.8 66.5 1.0 CA A:VAL4956 4.8 53.1 1.0 OD1 A:ASP4954 4.8 61.5 1.0 CG A:PRO4957 4.8 60.9 1.0 NE A:ARG4989 4.9 40.8 1.0 C A:ASP4954 4.9 62.1 1.0 OE1 A:GLN4727 5.0 48.7 1.0 C A:PRO4953 5.0 58.6 1.0

Iodine binding site 2 out of 3 in the Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:I5110 b:65.4 occ:0.67 N A:LEU4838 3.7 65.4 1.0 ND1 A:HIS4875 3.9 92.5 1.0 CG A:LEU4838 4.1 68.0 1.0 CA A:ALA4837 4.1 60.4 1.0 CD1 A:LEU4838 4.2 67.8 1.0 CG A:HIS4875 4.2 84.5 1.0 CB A:HIS4875 4.2 62.8 1.0 CB A:ALA4837 4.3 55.4 1.0 CB A:LEU4838 4.3 60.4 1.0 C A:ALA4837 4.5 60.3 1.0 CG1 A:VAL4834 4.5 53.6 1.0 CD2 A:LEU4783 4.5 64.3 1.0 CE1 A:HIS4875 4.6 88.9 1.0 CA A:LEU4838 4.7 59.3 1.0 CG2 A:VAL4834 4.7 56.2 1.0

Iodine binding site 3 out of 3 in the Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of REA1-Midas Domain From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ A:I5111 b:87.5 occ:0.29 CD2 A:LEU4730 4.7 47.9 1.0 CG A:LEU4730 4.8 47.5 1.0

Y.L.Ahmed, M.Thoms, V.Mitterer, I.Sinning, E.Hurt. Crystal Structures of REA1-Midas Bound to Its Ribosome Assembly Factor Ligands Resembling Integrin-Ligand-Type Complexes. Nat Commun V. 10 3050 2019.
ISSN: ESSN 2041-1723
PubMed: 31296859
DOI: 10.1038/S41467-019-10922-6