Iodine in PDB 6rzm: Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine)

Protein crystallography data

The structure of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine), PDB code: 6rzm was solved by R.Kumar, M.L.Verteramo, U.J.Nilsson, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.62 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.070, 57.238, 61.655, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.8

Other elements in 6rzm:

The structure of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Chlorine (Cl) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) (pdb code 6rzm). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine), PDB code: 6rzm:

Iodine binding site 1 out of 1 in 6rzm

Go back to Iodine Binding Sites List in 6rzm
Iodine binding site 1 out of 1 in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:26.8
occ:1.00
I1 A:KON301 0.0 26.8 1.0
C4 A:KON301 2.1 28.0 1.0
C5 A:KON301 3.0 25.0 1.0
C1 A:KON301 3.0 29.1 1.0
HG3 A:GLU184 3.2 25.2 1.0
O A:GLY182 3.2 20.1 1.0
HD21 A:ASN174 3.3 20.2 1.0
HB3 A:TRP181 3.6 23.0 1.0
HD22 A:ASN174 3.8 20.2 1.0
HB2 A:TRP181 3.8 23.0 1.0
ND2 A:ASN174 3.9 16.8 1.0
O2 A:KON301 3.9 18.6 1.0
CG A:GLU184 4.1 21.0 1.0
OE2 A:GLU184 4.1 21.5 1.0
CB A:TRP181 4.2 19.1 1.0
O A:HOH504 4.3 35.3 1.0
CD A:GLU184 4.3 21.4 1.0
C6 A:KON301 4.3 24.8 1.0
C2 A:KON301 4.3 28.5 1.0
HG2 A:GLU184 4.4 25.2 1.0
C A:GLY182 4.5 19.8 1.0
O A:HOH548 4.5 49.0 1.0
H A:GLU184 4.6 21.7 1.0
HA A:ARG183 4.7 24.4 1.0
C A:TRP181 4.8 19.6 1.0
O A:TRP181 4.8 21.0 1.0
C3 A:KON301 4.9 27.5 1.0

Reference:

M.L.Verteramo, F.Zetterberg, R.Kumar, J.Wallerstein, M.M.Ignjatovic, H.Leffler, U.Ryde, D.T.Logan, M.Akke, U.J.Nilsson. Thermodynamic Studies of Halogen-Bond Interactions in Galectin-3 To Be Published.
Page generated: Sun Dec 13 19:47:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy