Iodine in PDB 6s4l: Structure of Human KCTD1

Protein crystallography data

The structure of Structure of Human KCTD1, PDB code: 6s4l was solved by D.M.Pinkas, J.C.Bufton, A.E.Fox, A.C.W.Pike, J.A.Newman, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, A.N.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.57 / 2.42
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.454, 95.870, 104.343, 90.00, 92.16, 90.00
R / Rfree (%) 24.5 / 28.1

Other elements in 6s4l:

The structure of Structure of Human KCTD1 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Structure of Human KCTD1 (pdb code 6s4l). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Structure of Human KCTD1, PDB code: 6s4l:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 6s4l

Go back to Iodine Binding Sites List in 6s4l
Iodine binding site 1 out of 2 in the Structure of Human KCTD1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of Human KCTD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I301

b:64.3
occ:1.00
N B:GLY224 3.4 83.7 1.0
N C:GLY224 3.7 77.3 1.0
N E:GLY224 3.8 95.6 1.0
CA B:GLY223 4.0 58.6 1.0
CA A:GLY223 4.1 69.5 1.0
N A:GLY224 4.1 98.7 1.0
CA D:GLY223 4.2 81.6 1.0
C B:GLY223 4.2 75.1 1.0
CA E:GLY223 4.2 78.9 1.0
NA A:NA301 4.3 59.3 1.0
CA B:GLY224 4.3 90.3 1.0
N D:GLY224 4.3 76.9 1.0
C E:GLY223 4.4 93.8 1.0
CA C:GLY223 4.4 84.5 1.0
O A:GLY224 4.4 0.3 1.0
CA C:GLY224 4.5 83.9 1.0
C C:GLY223 4.6 70.8 1.0
C A:GLY223 4.6 74.5 1.0
CA E:GLY224 4.6 0.7 1.0
O B:GLY224 4.7 0.1 1.0
C D:GLY223 4.7 87.5 1.0
C B:GLY224 4.8 0.2 1.0
O D:GLY222 4.9 59.3 1.0
O A:GLY222 4.9 67.5 1.0

Iodine binding site 2 out of 2 in 6s4l

Go back to Iodine Binding Sites List in 6s4l
Iodine binding site 2 out of 2 in the Structure of Human KCTD1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of Human KCTD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I302

b:47.2
occ:1.00
NA A:NA301 3.5 59.3 1.0
O B:GLY222 3.8 51.9 1.0
N B:GLY222 4.0 56.0 1.0
N A:GLY222 4.1 53.0 1.0
CA A:CYS221 4.1 58.6 1.0
CA C:CYS221 4.1 60.3 1.0
N C:GLY222 4.1 61.0 1.0
O C:GLY222 4.1 61.2 1.0
CA B:CYS221 4.1 53.2 1.0
CA D:CYS221 4.3 59.6 1.0
O E:GLY222 4.3 64.4 1.0
O A:GLY222 4.3 67.5 1.0
CA E:CYS221 4.4 69.3 1.0
N D:GLY222 4.4 73.9 1.0
N E:GLY222 4.4 76.8 1.0
C B:CYS221 4.5 59.0 1.0
CB C:CYS221 4.5 61.8 1.0
C A:CYS221 4.5 57.2 1.0
O D:GLY222 4.6 59.3 1.0
C C:CYS221 4.6 65.1 1.0
CB A:CYS221 4.6 47.8 1.0
CB B:CYS221 4.6 48.8 1.0
CB D:CYS221 4.6 61.7 1.0
O C:SER220 4.7 68.1 1.0
C B:GLY222 4.7 64.7 1.0
C D:CYS221 4.8 74.6 1.0
O D:SER220 4.8 53.0 1.0
CB E:CYS221 4.8 59.8 1.0
O A:SER220 4.8 62.5 1.0
C E:CYS221 4.8 70.4 1.0
NA A:NA302 4.9 43.5 1.0
O B:SER220 4.9 47.7 1.0
CA B:GLY222 4.9 57.9 1.0
C C:GLY222 5.0 68.4 1.0
O E:SER220 5.0 38.4 1.0

Reference:

D.M.Pinkas, J.C.Bufton, A.E.Fox, A.C.W.Pike, J.A.Newman, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, A.N.Bullock. Structure of Human KCTD1 To Be Published.
Page generated: Sun Dec 13 19:48:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy