Iodine in PDB 7ben: Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs

The structure of Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs, PDB code: 7ben was solved by D.Zhou, Y.Zhao, J.Ren, D.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.38 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	93.188, 149.794, 229.099, 90, 90, 90
R / Rfree (%)	24 / 28.2

The structure of Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs also contains other interesting chemical elements:

Bromine

(Br)

14 atoms

The binding sites of Iodine atom in the Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs (pdb code 7ben). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs, PDB code: 7ben:

Iodine binding site 1 out of 1 in the Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Receptor Binding Domain of Sars-Cov-2 Spike Glycoprotein in A Ternary Complex with Covox-253 and Covox-75 Fabs within 5.0Å range: probe atom residue distance (Å) B Occ G:I308 b:254.1 occ:1.00 ND1 G:HIS178 3.4 78.0 1.0 CE1 G:HIS178 3.6 77.1 1.0 OD1 I:ASP167 3.7 86.4 1.0 CB I:THR164 4.3 50.3 1.0 O I:GLU165 4.4 65.8 1.0 OG1 I:THR164 4.6 56.9 1.0 CG2 I:THR164 4.6 68.0 1.0 CG G:HIS178 4.7 56.6 1.0 O G:VAL177 4.7 61.5 1.0 CG I:ASP167 4.7 72.1 1.0 CA I:ASP167 4.9 64.8 1.0 NE2 G:HIS178 4.9 71.1 1.0 CB I:ASP167 5.0 69.5 1.0

W.Dejnirattisai, D.Zhou, H.M.Ginn, H.M.Duyvesteyn, P.Supasa, J.B.Case, Y.Zhao, T.S.Walter, A.J.Mentzer, C.Liu, B.Wang, G.C.Paesen, J.Slon-Campos, C.Lopez-Camacho, N.M.Kafai, A.L.Bailey, R.E.Chen, B.Ying, C.Thompson, J.Bolton, A.Fyfe, S.Gupta, T.K.Tan, J.Gilbert-Jaramillo, W.James, M.Knight, M.W.Carroll, D.Skelly, C.Dold, Y.Peng, R.Levin, T.Dong, A.J.Pollard, J.C.Knight, P.Klenerman, N.Temperton, D.R.Hall, M.A.Williams, N.G.Paterson, F.K.Bertram, C.A.Seibert, D.K.Clare, A.Howe, J.Raedecke, Y.Song, A.R.Townsend, K.Y.A.Huang, E.E.Fry, J.Mongkolsapaya, M.S.Diamond, J.Ren, D.I.Stuart, G.R.Screaton. The Antigenic Anatomy of Sars-Cov-2 Receptor Binding Domain Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.02.032