Atomistry » Iodine » PDB 7ben-7fgj » 7c5y
Atomistry »
  Iodine »
    PDB 7ben-7fgj »
      7c5y »

Iodine in PDB 7c5y: Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide

Enzymatic activity of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide

All present enzymatic activity of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide, PDB code: 7c5y was solved by M.Senda, T.Senda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.60 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.781, 192.898, 58.206, 90, 96.46, 90
R / Rfree (%) 16.7 / 20.7

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide (pdb code 7c5y). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 6 binding sites of Iodine where determined in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide, PDB code: 7c5y:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6;

Iodine binding site 1 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 1 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I701

b:24.4
occ:1.00
 OG1 A:THR159 3.3 26.4 1.0
OH A:TYR176 3.5 25.0 1.0
N A:THR159 3.6 25.4 1.0
CE2 A:TYR176 3.7 25.3 1.0
NE2 A:HIS256 3.8 19.2 1.0
CZ A:TYR176 4.0 24.4 1.0
CB A:THR159 4.1 22.2 1.0
OG A:SER258 4.1 21.1 1.0
CB A:SER258 4.1 22.0 1.0
CE2 A:PHE193 4.1 21.5 1.0
CD2 A:PHE193 4.2 22.1 1.0
CZ2 A:TRP118 4.3 21.0 1.0
CA A:PRO158 4.3 27.7 1.0
CE1 A:PHE156 4.3 23.4 1.0
OH A:TYR224 4.3 24.4 1.0
CZ A:PHE156 4.4 21.9 1.0
CA A:THR159 4.5 28.4 1.0
CD2 A:HIS256 4.5 15.1 1.0
C A:PRO158 4.5 27.8 1.0
CE1 A:HIS256 4.5 19.5 1.0
CE1 A:PHE177 4.6 26.9 1.0
CH2 A:TRP118 4.6 20.3 1.0
CB A:PRO158 4.6 26.0 1.0
CZ A:PHE193 4.8 26.4 1.0
CD2 A:TYR176 4.8 26.3 1.0
CG A:PHE193 4.9 25.2 1.0
CZ A:PHE177 4.9 23.6 1.0

Iodine binding site 2 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 2 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I702

b:15.8
occ:1.00
 OG1 A:THR322 3.3 14.2 1.0
OH A:TYR339 3.5 11.7 1.0
CE2 A:TYR339 3.7 13.3 1.0
N A:THR322 3.7 12.1 1.0
NE2 A:HIS420 3.8 13.1 1.0
CE2 A:PHE357 4.0 13.3 1.0
CB A:SER422 4.0 12.9 1.0
CZ A:TYR339 4.0 13.7 1.0
CD2 A:PHE357 4.0 11.6 1.0
OG A:SER422 4.1 10.7 1.0
CB A:THR322 4.2 13.8 1.0
OH A:TYR388 4.2 13.5 1.0
CA A:PRO321 4.4 15.6 1.0
CE1 A:PHE319 4.4 10.9 1.0
CZ2 A:TRP281 4.4 14.2 1.0
CZ A:PHE319 4.4 14.2 1.0
CE1 A:PHE340 4.4 16.5 1.0
CE1 A:HIS420 4.4 8.1 1.0
CH2 A:TRP281 4.6 11.8 1.0
CA A:THR322 4.6 13.0 1.0
C A:PRO321 4.6 14.3 1.0
CD2 A:HIS420 4.6 8.5 1.0
CB A:PRO321 4.6 12.9 1.0
CZ A:PHE357 4.7 12.5 1.0
CZ A:PHE340 4.7 12.7 1.0
CG A:PHE357 4.7 12.2 1.0
CD2 A:TYR339 4.8 14.4 1.0

Iodine binding site 3 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 3 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I703

b:15.9
occ:1.00
 OG1 A:THR486 3.3 12.1 1.0
OH A:TYR503 3.6 10.9 1.0
CE2 A:TYR503 3.7 11.5 1.0
N A:THR486 3.8 10.6 1.0
NE2 A:HIS584 3.9 11.2 1.0
CE2 A:PHE521 4.1 16.5 1.0
CB A:SER586 4.1 9.2 1.0
CZ A:TYR503 4.1 13.9 1.0
OH A:TYR552 4.1 15.9 1.0
CD2 A:PHE521 4.1 13.4 1.0
OG A:SER586 4.1 11.8 1.0
CB A:THR486 4.2 12.8 1.0
CZ A:PHE483 4.3 9.9 1.0
CE1 A:PHE483 4.3 12.8 1.0
CA A:PRO485 4.4 12.2 1.0
CZ2 A:TRP445 4.4 10.2 1.0
CH2 A:TRP445 4.5 11.6 1.0
CE1 A:HIS584 4.5 10.5 1.0
CA A:THR486 4.6 13.4 1.0
CE1 A:PHE504 4.6 14.1 1.0
C A:PRO485 4.6 11.4 1.0
CB A:PRO485 4.6 11.8 1.0
CD2 A:HIS584 4.7 9.8 1.0
CZ A:PHE521 4.8 17.3 1.0
CG A:PHE521 4.8 14.3 1.0
CZ A:PHE504 4.9 12.9 1.0
CD2 A:TYR503 4.9 10.0 1.0

Iodine binding site 4 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 4 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I701

b:33.0
occ:1.00
 OG1 B:THR159 3.4 32.3 1.0
OH B:TYR176 3.4 28.0 1.0
N B:THR159 3.7 27.8 1.0
CE2 B:TYR176 3.7 28.8 1.0
NE2 B:HIS256 3.9 25.6 1.0
CE2 B:PHE193 3.9 37.6 1.0
CZ B:TYR176 4.0 26.5 1.0
CB B:THR159 4.0 31.6 1.0
CD2 B:PHE193 4.0 35.8 1.0
CB B:SER258 4.1 31.7 1.0
OG B:SER258 4.1 25.4 1.0
OH B:TYR224 4.2 28.2 1.0
CA B:PRO158 4.3 30.8 1.0
CA B:THR159 4.5 30.9 1.0
CE1 B:PHE156 4.5 27.2 1.0
CZ B:PHE156 4.5 27.6 1.0
CB B:PRO158 4.5 28.4 1.0
C B:PRO158 4.5 27.8 1.0
CZ2 B:TRP118 4.6 30.3 1.0
CE1 B:HIS256 4.6 22.1 1.0
CZ B:PHE193 4.6 38.6 1.0
CD2 B:HIS256 4.6 23.0 1.0
CE1 B:PHE177 4.6 30.9 1.0
CG B:PHE193 4.7 29.0 1.0
CH2 B:TRP118 4.8 31.7 1.0
CD2 B:TYR176 4.9 28.2 1.0

Iodine binding site 5 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 5 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I702

b:15.1
occ:1.00
 OG1 B:THR322 3.3 13.1 1.0
OH B:TYR339 3.5 11.6 1.0
N B:THR322 3.7 12.3 1.0
CE2 B:TYR339 3.7 11.1 1.0
NE2 B:HIS420 3.9 10.3 1.0
CE2 B:PHE357 3.9 16.6 1.0
CB B:SER422 3.9 12.6 1.0
OG B:SER422 3.9 11.3 1.0
OH B:TYR388 4.0 16.8 1.0
CD2 B:PHE357 4.0 12.3 1.0
CZ B:TYR339 4.0 12.9 1.0
CB B:THR322 4.1 12.5 1.0
CZ B:PHE319 4.3 10.6 1.0
CE1 B:PHE319 4.3 10.8 1.0
CA B:PRO321 4.3 11.4 1.0
CE1 B:HIS420 4.4 10.5 1.0
CZ2 B:TRP281 4.4 10.6 1.0
CE1 B:PHE340 4.5 12.6 1.0
CA B:THR322 4.5 11.1 1.0
C B:PRO321 4.5 10.2 1.0
CH2 B:TRP281 4.6 10.3 1.0
CB B:PRO321 4.7 11.4 1.0
CZ B:PHE357 4.7 15.9 1.0
CD2 B:HIS420 4.7 6.8 1.0
CZ B:PHE340 4.7 12.8 1.0
CG B:PHE357 4.8 13.4 1.0
CD2 B:TYR339 4.9 10.7 1.0

Iodine binding site 6 out of 6 in 7c5y

Go back to Iodine Binding Sites List in 7c5y
Iodine binding site 6 out of 6 in the Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of the Iota-Carbonic Anhydrase From Eukaryotic Microalga Complexed with Iodide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I703

b:14.4
occ:1.00
 OG1 B:THR486 3.3 11.8 1.0
OH B:TYR503 3.6 10.6 1.0
N B:THR486 3.6 10.3 1.0
CE2 B:TYR503 3.7 11.2 1.0
NE2 B:HIS584 3.8 10.8 1.0
CB B:SER586 4.0 8.9 1.0
CZ B:TYR503 4.0 12.0 1.0
CB B:THR486 4.0 11.9 1.0
OG B:SER586 4.1 10.5 1.0
CE2 B:PHE521 4.1 15.1 1.0
OH B:TYR552 4.1 12.6 1.0
CD2 B:PHE521 4.1 12.4 1.0
CE1 B:HIS584 4.3 8.0 1.0
CA B:PRO485 4.4 9.9 1.0
CE1 B:PHE483 4.4 7.9 1.0
CZ2 B:TRP445 4.4 9.9 1.0
CZ B:PHE483 4.4 7.1 1.0
CA B:THR486 4.5 10.5 1.0
C B:PRO485 4.5 11.3 1.0
CE1 B:PHE504 4.6 10.9 1.0
CD2 B:HIS584 4.6 6.4 1.0
CB B:PRO485 4.6 7.1 1.0
CH2 B:TRP445 4.7 9.8 1.0
CZ B:PHE521 4.7 12.9 1.0
CZ B:PHE504 4.8 8.9 1.0
CD2 B:TYR503 4.8 8.7 1.0
CG B:PHE521 4.8 14.9 1.0

Reference:

Y.Hirakawa, M.Senda, K.Fukuda, T.Senda. A Novel Type of Carbonic Anhydrase Bmc Biol. 2021.
ISSN: ESSN 1741-7007
Page generated: Mon Aug 12 00:54:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy