Iodine in PDB 7fgj: The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.

The structure of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgj was solved by T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.15 / 1.89
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.931, 179.704, 41.431, 90, 90, 90
R / Rfree (%)	19.6 / 26.2

The structure of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. also contains other interesting chemical elements:

Chlorine

(Cl)

7 atoms

The binding sites of Iodine atom in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. (pdb code 7fgj). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 5 binding sites of Iodine where determined in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgj:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;

Iodine binding site 1 out of 5 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range: probe atom residue distance (Å) B Occ H:I301 b:71.4 occ:1.00 O H:THR210 3.0 25.6 1.0 C H:THR210 3.7 27.2 1.0 N H:THR210 3.8 27.4 1.0 C H:SER209 3.9 30.5 1.0 O H:HIS205 4.0 22.8 1.0 CB H:ALA204 4.0 29.6 1.0 N H:HIS205 4.1 26.6 1.0 C H:HIS205 4.2 26.6 1.0 CA H:SER209 4.2 27.9 1.0 N H:PRO206 4.2 30.4 1.0 CA H:PRO206 4.3 30.3 1.0 CA H:THR210 4.4 28.7 1.0 O H:SER209 4.5 27.2 1.0 O H:HOH416 4.5 51.2 1.0 CA H:ALA204 4.5 24.4 1.0 N H:LYS211 4.5 25.2 1.0 CB H:LYS211 4.7 28.8 1.0 C H:ALA204 4.7 28.6 1.0 CA H:HIS205 4.9 27.0 1.0 CD H:PRO206 4.9 28.6 1.0 CA H:LYS211 4.9 25.4 1.0

Iodine binding site 2 out of 5 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range: probe atom residue distance (Å) B Occ H:I302 b:44.4 occ:1.00 O H:HOH558 3.3 22.1 1.0 O H:HOH483 4.1 38.5 1.0 CA H:SER118 4.3 31.4 1.0 CG H:PRO14 4.3 29.5 1.0 N H:SER119 4.3 33.2 1.0 OG H:SER119 4.4 45.5 1.0 O H:VAL117 4.4 31.6 1.0 CB H:SER88 4.5 23.7 1.0 O H:HOH474 4.6 26.1 1.0 O H:HOH519 4.8 41.7 1.0 C H:SER118 4.8 28.3 1.0 CB H:PRO14 4.8 28.9 1.0 N H:SER118 4.9 28.5 1.0 C H:VAL117 4.9 24.4 1.0

Iodine binding site 3 out of 5 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range: probe atom residue distance (Å) B Occ L:I301 b:29.7 occ:1.00 O L:HOH432 3.4 26.9 1.0 O H:HOH482 3.5 41.7 1.0 N H:TRP47 3.7 24.7 1.0 N L:PHE106 3.7 28.7 1.0 NH2 H:ARG40 3.7 30.0 1.0 O H:HOH534 4.0 32.8 1.0 CA L:VAL105 4.2 32.1 1.0 CA H:GLU46 4.2 24.2 1.0 CB H:TRP47 4.2 26.0 1.0 CD2 L:PHE106 4.3 26.5 1.0 O H:LEU45 4.4 25.3 1.0 O L:PHE106 4.4 31.0 1.0 C H:GLU46 4.5 25.5 1.0 C L:VAL105 4.5 29.2 1.0 CB L:PHE106 4.5 25.5 1.0 O L:TYR104 4.5 28.0 1.0 ND2 H:ASN61 4.6 31.6 1.0 CA H:TRP47 4.6 23.9 1.0 CA L:PHE106 4.6 27.0 1.0 CG H:GLU46 4.8 23.2 1.0 CG1 L:VAL105 4.8 36.3 1.0 CG L:PHE106 4.9 25.9 1.0 CB L:VAL105 4.9 32.5 1.0 O H:HOH551 5.0 43.1 1.0 CZ H:ARG40 5.0 28.6 1.0

Iodine binding site 4 out of 5 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range: probe atom residue distance (Å) B Occ L:I302 b:160.4 occ:1.00 NE2 L:HIS28 3.5 36.4 1.0 CE1 L:HIS28 3.7 33.3 1.0 O L:HOH555 3.7 58.6 1.0 NE2 L:GLN27 4.1 67.9 1.0 N L:GLN1 4.1 62.2 1.0 N L:LEU2 4.3 43.4 1.0 C L:GLN1 4.3 46.7 1.0 CB L:GLN1 4.4 59.1 1.0 CD1 L:ILE98 4.4 47.9 1.0 CA L:GLN1 4.5 55.1 1.0 O L:GLN1 4.7 42.6 1.0 CD2 L:HIS28 4.8 37.8 1.0 ND1 L:HIS28 5.0 37.1 1.0

Iodine binding site 5 out of 5 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range: probe atom residue distance (Å) B Occ L:I303 b:49.1 occ:1.00 O L:HOH447 3.3 33.8 1.0 N L:THR21 3.7 35.4 1.0 CA L:LEU20 3.9 38.6 1.0 CD2 L:LEU20 4.1 38.6 1.0 O L:HOH411 4.2 48.5 1.0 CG2 L:THR110 4.2 33.7 1.0 O L:HOH450 4.2 34.1 1.0 OG L:SER7 4.3 43.9 1.0 CB L:SER7 4.3 40.2 1.0 C L:LEU20 4.4 38.0 1.0 CB L:ALA10 4.4 38.5 1.0 O L:LYS19 4.5 42.5 1.0 CB L:LEU20 4.5 39.1 1.0 O L:THR21 4.5 41.4 1.0 OG1 L:THR110 4.5 31.4 1.0 CA L:THR21 4.7 37.5 1.0 CB L:THR21 4.8 41.7 1.0 CB L:THR110 4.9 31.2 1.0 CG L:LEU20 5.0 39.7 1.0

T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo. The Cross-Reaction Complex Structure with Vqilnk Peptide and the Antibody'S Fab Domain. To Be Published.