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Iodine in PDB 7gqo: Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860:
3.4.22.28;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860, PDB code: 7gqo was solved by R.M.Lithgo, M.Fairhead, L.Koekemoer, J.C.Aschenbrenner, B.H.Balcomb, A.S.Godoy, P.G.Marples, X.Ni, C.W.E.Tomlinson, W.Thompson, C.Wild, D.Fearon, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.63 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.764, 61.273, 147.204, 90, 90, 90
R / Rfree (%) 20.7 / 25.5

Iodine Binding Sites:

The binding sites of Iodine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860 (pdb code 7gqo). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860, PDB code: 7gqo:

Iodine binding site 1 out of 1 in 7gqo

Go back to Iodine Binding Sites List in 7gqo
Iodine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Z3227118860 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I201

b:85.5
occ:0.40
 I B:T4R201 0.0 85.5 0.4
C B:T4R201 2.1 64.1 0.4
N1 B:T4R201 3.0 61.8 0.4
C1 B:T4R201 3.1 61.4 0.4
O B:HOH381 3.5 44.1 1.0
NH1 B:ARG19 3.7 42.1 1.0
CE1 B:TYR48 3.8 36.6 1.0
CD1 B:TYR48 3.9 32.4 1.0
O B:THR20 4.1 26.2 1.0
N B:T4R201 4.2 60.6 0.4
C2 B:T4R201 4.2 60.1 0.4
C B:THR20 4.2 27.8 1.0
N B:GLU21 4.4 29.1 1.0
CG B:ARG19 4.5 30.5 1.0
CA B:GLU21 4.6 33.9 1.0
O B:ARG19 4.7 20.8 1.0
CZ B:ARG19 4.8 45.5 1.0
CD B:ARG19 4.9 34.4 1.0
CZ B:TYR48 4.9 32.4 1.0
CA B:THR20 4.9 24.7 1.0
C B:ARG19 5.0 21.8 1.0

Reference:

R.M.Lithgo, M.Fairhead, L.Koekemoer, J.C.Aschenbrenner, B.H.Balcomb, A.S.Godoy, P.G.Marples, X.Ni, C.W.E.Tomlinson, W.Thompson, C.Wild, D.Fearon, M.A.Walsh, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Mon Aug 12 01:10:44 2024

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