Iodine in PDB 7jpd: Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947

The structure of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947, PDB code: 7jpd was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.85 / 2.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	131.79, 142.36, 234.23, 90, 90, 90
R / Rfree (%)	25.4 / 28.6

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 76;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 (pdb code 7jpd). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 76 binding sites of Iodine where determined in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947, PDB code: 7jpd:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I603 b:45.5 occ:0.64 N A:ASP19 3.5 55.1 1.0 O A:ARG315 3.7 47.9 1.0 CG1 a:VAL429 3.8 44.5 1.0 N A:ARG315 3.9 50.5 1.0 CB A:ASP19 4.0 55.5 1.0 O A:LYS313 4.0 46.7 1.0 CG A:LYS313 4.1 47.2 1.0 CA A:VAL18 4.2 57.1 1.0 CA A:ASP19 4.3 56.5 1.0 CG A:ARG315 4.3 50.0 1.0 C A:VAL18 4.3 60.3 1.0 CE A:LYS313 4.4 47.9 1.0 O A:ASP19 4.4 54.5 1.0 C A:LYS313 4.5 47.0 1.0 CD A:LYS313 4.5 47.2 1.0 CB A:VAL18 4.5 57.0 1.0 CG A:ASP19 4.5 57.0 1.0 CA A:LEU314 4.5 50.7 1.0 ND2 a:ASN433 4.6 49.7 1.0 C A:ARG315 4.7 48.3 1.0 N A:LEU314 4.7 50.4 1.0 C A:LEU314 4.8 51.0 1.0 OD2 A:ASP19 4.8 57.8 1.0 CA A:ARG315 4.8 49.4 1.0 CB A:LYS313 4.8 46.1 1.0 C A:ASP19 4.9 56.4 1.0 CG1 A:VAL18 5.0 55.0 1.0

Iodine binding site 2 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I604 b:47.8 occ:0.72 N A:GLY55 3.4 59.7 1.0 CB A:CYS57 3.9 51.1 1.0 N A:CYS57 3.9 57.1 1.0 N A:GLU70 4.0 76.9 1.0 CB A:CYS69 4.0 57.0 1.0 CA A:LEU54 4.0 50.2 1.0 CA A:CYS69 4.0 61.2 1.0 N A:LYS56 4.1 61.9 1.0 CB A:LEU54 4.1 48.9 1.0 C A:LEU54 4.2 55.7 1.0 SG A:CYS57 4.2 54.1 1.0 CA A:GLY55 4.2 64.6 1.0 CD2 A:LEU54 4.4 43.9 1.0 C A:GLY55 4.4 68.7 1.0 CA A:CYS57 4.5 56.0 1.0 C A:CYS69 4.5 67.3 1.0 OE1 A:GLU70 4.8 77.9 1.0 O A:CYS57 4.8 56.6 1.0 SG A:CYS69 4.8 51.5 1.0 O A:GLU70 4.9 80.4 1.0 CD1 A:TRP62 4.9 43.6 1.0 CG A:LEU54 4.9 45.9 1.0 C A:LYS56 4.9 60.8 1.0 CA A:LYS56 4.9 60.1 1.0 CA A:GLU70 5.0 79.7 1.0 CB A:GLU70 5.0 79.6 1.0

Iodine binding site 3 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I605 b:53.7 occ:0.39 N A:GLY90 3.4 56.6 1.0 O A:GLU88 3.5 64.2 1.0 O7 G:NAG1 3.8 53.5 1.0 O A:THR91 4.0 63.9 1.0 NH1 A:ARG223 4.0 51.9 1.0 CA A:CYS92 4.1 52.9 1.0 CA A:ASN89 4.1 58.9 1.0 C A:THR91 4.1 61.5 1.0 CD A:ARG223 4.1 48.0 1.0 N A:CYS92 4.2 55.4 1.0 C A:GLY90 4.2 57.1 1.0 CA A:GLY90 4.2 55.9 1.0 C A:ASN89 4.2 56.8 1.0 CZ A:ARG223 4.2 49.8 1.0 N A:THR91 4.3 58.1 1.0 NE A:ARG223 4.3 48.9 1.0 C A:GLU88 4.5 65.3 1.0 ND2 A:ASN89 4.6 57.2 1.0 CB A:CYS92 4.7 53.3 1.0 O A:GLY90 4.7 54.8 1.0 ND2 A:ASN66 4.7 54.0 1.0 N A:ASN89 4.8 63.0 1.0 CA A:THR91 4.9 59.1 1.0 NH2 A:ARG223 5.0 50.6 1.0 C7 G:NAG1 5.0 53.8 1.0

Iodine binding site 4 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I606 b:81.9 occ:0.58 NZ A:LYS196 3.4 50.2 1.0 OD1 A:ASN247 3.5 48.8 1.0 ND2 A:ASN247 4.0 47.7 1.0 CG A:ASN247 4.0 47.1 1.0 CE A:LYS196 4.1 49.3 1.0 CB A:LYS162 4.2 47.5 1.0 N A:LYS162 4.5 49.2 1.0 CD A:LYS196 4.8 48.8 1.0 CA A:LYS162 4.9 47.7 1.0

Iodine binding site 5 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I607 b:61.4 occ:0.36 CD A:PRO126 4.1 63.0 1.0 O A:SER124 4.3 65.7 1.0 CE1 A:HIS128 4.4 51.6 1.0 CB A:LEU163 4.4 49.2 1.0 ND1 A:HIS128 4.4 52.4 1.0 CE3 A:TRP125 4.7 53.5 1.0 CA A:TRP125 4.7 59.6 1.0 N A:PRO126 4.8 62.2 1.0 CA A:LEU163 4.8 48.7 1.0 N A:LYS127 4.9 59.5 1.0 CB A:LYS127 5.0 57.0 1.0

Iodine binding site 6 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I608 b:150.1 occ:1.00 NE2 A:HIS182 3.6 44.1 1.0 OH A:TYR93 3.7 49.7 1.0 CE1 A:HIS182 3.8 44.4 1.0 CG A:ASP189 4.3 68.4 1.0 OD2 A:ASP189 4.3 69.9 1.0 CB A:ASP189 4.3 65.2 1.0 CD1 A:LEU193 4.5 50.7 1.0 CA A:PRO184 4.7 49.9 1.0 NE2 A:GLN225 4.7 45.6 1.0 CB A:PRO184 4.8 52.2 1.0 OD1 A:ASP189 4.8 69.2 1.0 N A:SER185 4.9 54.0 1.0 CD2 A:HIS182 4.9 43.0 1.0 CH2 A:TRP152 5.0 45.3 1.0 OG A:SER185 5.0 60.6 1.0 CZ2 A:TRP152 5.0 42.8 1.0

Iodine binding site 7 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I609 b:46.0 occ:0.62 C A:ARG195 3.7 54.1 1.0 O A:ARG195 3.8 53.5 1.0 CA A:ARG195 3.9 54.7 1.0 CG A:LYS191 4.0 56.5 1.0 CB A:LYS191 4.0 55.6 1.0 N A:LYS196 4.1 54.0 1.0 CE A:LYS191 4.5 59.8 1.0 O A:LYS191 4.5 56.2 1.0 CA A:LYS191 4.5 55.3 1.0 CD A:ARG195 4.5 62.5 1.0 CD A:LYS191 4.6 56.8 1.0 CA A:LYS196 4.7 53.5 1.0 CB A:ARG195 4.7 58.4 1.0 NH1 A:ARG195 4.8 62.5 1.0 C A:LYS191 4.9 56.1 1.0 N A:ARG195 5.0 54.6 1.0

Iodine binding site 8 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I610 b:43.7 occ:0.31 O A:ASP278 3.7 44.7 1.0 CA A:THR279 3.7 42.3 1.0 C A:THR279 3.8 42.2 1.0 C A:ASP278 3.8 44.6 1.0 N A:THR279 3.8 44.4 1.0 N A:LYS280 4.0 43.0 1.0 CB A:ASP278 4.1 46.7 1.0 O A:THR279 4.2 41.1 1.0 CG A:LYS280 4.3 45.6 1.0 CA A:ASP278 4.6 47.6 1.0 CB A:LYS280 4.8 45.3 1.0 CD A:LYS280 4.9 47.0 1.0 CA A:LYS280 4.9 44.3 1.0

Iodine binding site 9 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I611 b:57.1 occ:0.39 NE A:ARG321 3.2 77.7 1.0 N a:GLY330 3.6 52.2 1.0 CD A:ARG321 3.7 76.4 1.0 CA a:GLY330 4.0 49.1 1.0 CB a:ILE335 4.0 52.6 1.0 O a:LEU437 4.0 51.3 1.0 CZ A:ARG321 4.2 79.0 1.0 CG2 a:ILE335 4.2 53.9 1.0 CB a:ASP441 4.3 49.4 1.0 CG a:ASP441 4.4 50.9 1.0 CG A:ARG321 4.4 73.0 1.0 NH1 A:ARG321 4.4 79.8 1.0 CD1 a:ILE335 4.5 50.8 1.0 OD2 a:ASP441 4.6 51.0 1.0 N a:ALA336 4.6 60.0 1.0 CB a:LEU437 4.6 53.2 1.0 C a:LEU437 4.6 51.3 1.0 CG1 a:ILE335 4.7 52.1 1.0 OD1 a:ASP441 4.8 51.4 1.0 CB a:ALA336 5.0 63.2 1.0

Iodine binding site 10 out of 76 in the Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 within 5.0Å range: probe atom residue distance (Å) B Occ A:I612 b:52.8 occ:0.46 NE A:ARG315 3.7 50.2 1.0 CD A:ARG315 3.8 50.7 1.0 N A:THR17 3.8 54.7 1.0 O A:THR17 3.9 53.6 1.0 CA A:ASP16 4.0 54.1 1.0 CB A:ASP16 4.2 53.9 1.0 NZ A:LYS313 4.2 50.3 1.0 CZ A:ARG315 4.2 49.5 1.0 CG A:ASP16 4.3 54.4 1.0 CE A:LYS313 4.4 47.9 1.0 C A:ASP16 4.4 53.8 1.0 OD1 A:ASP16 4.5 55.6 1.0 OG1 A:THR17 4.7 56.3 1.0 NH2 A:ARG315 4.7 49.6 1.0 NH1 A:ARG315 4.8 49.8 1.0 OD2 A:ASP16 4.8 53.4 1.0 C A:THR17 4.8 56.1 1.0 CA A:THR17 4.9 56.4 1.0

T.E.Edwards, J.Abendroth, D.D.Lorimer, P.S.Horanyi, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of the Trimeric Full Length Mature Hemagglutinin From Influenza A Virus A/Fort Monmouth/1/1947 To Be Published.