Atomistry » Iodine » PDB 7fgk-7lod » 7jqr
Atomistry »
  Iodine »
    PDB 7fgk-7lod »
      7jqr »

Iodine in PDB 7jqr: Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation

Protein crystallography data

The structure of Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation, PDB code: 7jqr was solved by A.G.Kreutzer, K.J.Mcknelly, J.S.Nowick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.28 / 2.07
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 47.219, 47.219, 47.219, 90, 90, 90
R / Rfree (%) 20.3 / 25.4

Iodine Binding Sites:

The binding sites of Iodine atom in the Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation (pdb code 7jqr). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation, PDB code: 7jqr:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in 7jqr

Go back to Iodine Binding Sites List in 7jqr
Iodine binding site 1 out of 3 in the Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I101

b:89.7
occ:0.33
I A:IOD102 3.5 71.8 0.3

Iodine binding site 2 out of 3 in 7jqr

Go back to Iodine Binding Sites List in 7jqr
Iodine binding site 2 out of 3 in the Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I102

b:71.8
occ:0.33
I A:IOD101 3.5 89.7 0.3

Iodine binding site 3 out of 3 in 7jqr

Go back to Iodine Binding Sites List in 7jqr
Iodine binding site 3 out of 3 in the Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Abeta 16-36 Beta-Hairpin Mimic with E22G Arctic Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I103

b:84.1
occ:1.00
HD12 A:ILE13 3.1 45.0 1.0
HE1 A:ORN10 3.1 74.3 1.0
HA A:ALA8 3.2 47.4 1.0
O A:PHE7 3.4 26.7 1.0
C A:ALA8 3.5 49.1 1.0
O A:ALA8 3.5 49.6 1.0
HD3 A:ORN10 3.6 76.6 1.0
NE A:ORN10 3.6 61.9 1.0
CA A:ALA8 3.6 39.4 1.0
HB3 A:PHE7 3.7 31.0 1.0
C A:PHE7 3.7 27.7 1.0
N A:ALA8 3.7 33.0 1.0
O A:ALA11 3.8 33.4 1.0
CD1 A:ILE13 3.9 37.4 1.0
HG13 A:ILE13 3.9 38.8 1.0
N A:GLY9 3.9 58.9 1.0
HD11 A:ILE13 3.9 45.0 1.0
HB2 A:PHE7 4.0 31.0 1.0
HB A:ILE13 4.0 32.1 1.0
CD A:ORN10 4.1 63.7 1.0
HG3 A:ORN10 4.2 63.3 1.0
CB A:PHE7 4.2 25.8 1.0
H A:ALA8 4.3 39.7 1.0
H A:GLY9 4.3 70.8 1.0
H A:ILE13 4.3 27.4 1.0
CG1 A:ILE13 4.3 32.3 1.0
C A:GLY9 4.3 71.6 1.0
O A:HOH208 4.3 41.8 1.0
HA A:ILE12 4.5 33.6 1.0
CA A:GLY9 4.5 72.7 1.0
HA3 A:GLY9 4.6 87.3 1.0
CA A:PHE7 4.6 25.6 1.0
HD13 A:ILE13 4.7 45.0 1.0
CB A:ILE13 4.7 26.6 1.0
CG A:ORN10 4.7 52.7 1.0
N A:ILE13 4.8 22.8 1.0

Reference:

K.J.Mcknelly, J.S.Nowick. Effects of Familial Alzheimer'S Disease Mutations on the Assembly of A Constrained Beta-Hairpin Peptide Derived From Abeta To Be Published.
Page generated: Mon Aug 12 01:11:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy