Iodine in PDB 7lxr: Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp

The structure of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp, PDB code: 7lxr was solved by D.K.Worthylake, E.J.Wojcik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.11 / 1.74
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.692, 50.813, 93.344, 78.53, 77.87, 73.2
R / Rfree (%)	18.5 / 22.4

The structure of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Iodine atom in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp (pdb code 7lxr). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp, PDB code: 7lxr:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:I405 b:38.8 occ:1.00 O2 A:EDO401 2.7 14.3 1.0 HO2 A:EDO401 2.7 16.3 1.0 HD13 A:LEU161 2.8 24.9 1.0 HD21 A:LEU161 3.1 22.9 1.0 HG3 A:GLU164 3.1 32.1 1.0 HA A:GLU164 3.1 25.3 1.0 HB2 A:LYS312 3.2 22.2 1.0 H A:LEU313 3.2 16.8 1.0 HD12 A:LEU161 3.3 25.2 1.0 HD22 A:LEU161 3.3 23.2 1.0 HB3 A:SER288 3.3 15.9 1.0 O A:HOH622 3.4 30.9 1.0 CD1 A:LEU161 3.5 25.5 1.0 HB2 A:LEU313 3.6 15.7 1.0 CD2 A:LEU161 3.6 22.4 1.0 HB2 A:SER288 3.6 15.8 1.0 HD2 A:HIS232 3.7 11.8 1.0 H A:GLU164 3.8 22.6 1.0 H A:LYS312 3.8 20.5 1.0 N A:LEU313 3.9 16.4 1.0 OG A:SER311 3.9 20.8 0.5 CB A:SER288 3.9 15.7 1.0 C2 A:EDO401 4.0 21.6 1.0 CG A:LEU161 4.0 24.1 1.0 CA A:GLU164 4.0 25.4 1.0 CG A:GLU164 4.1 32.4 1.0 CB A:LYS312 4.1 22.2 1.0 HG A:SER288 4.1 16.9 0.0 H22 A:EDO401 4.1 20.0 1.0 HG A:SER311 4.2 21.6 0.0 HB2 A:SER311 4.2 20.0 0.5 HB3 A:LEU161 4.3 18.9 1.0 HD11 A:LEU161 4.3 24.9 1.0 CB A:LEU313 4.3 15.5 1.0 N A:LYS312 4.3 20.7 1.0 O A:HOH642 4.4 31.1 1.0 N A:GLU164 4.4 22.6 1.0 O A:HOH631 4.4 36.8 1.0 HB3 A:LEU313 4.4 15.6 1.0 HD23 A:LEU161 4.5 23.1 1.0 HB3 A:LYS312 4.5 22.1 1.0 CD2 A:HIS232 4.5 11.7 1.0 H12 A:EDO401 4.5 22.5 1.0 OE1 A:GLU164 4.5 40.7 1.0 HE2 A:HIS232 4.5 12.7 0.0 OG A:SER288 4.6 16.1 1.0 CA A:LYS312 4.6 19.8 1.0 H21 A:EDO401 4.6 19.9 1.0 CA A:LEU313 4.6 15.9 1.0 C A:LYS312 4.6 18.2 1.0 HG2 A:GLU164 4.7 32.6 1.0 CB A:GLU164 4.7 28.7 1.0 CD A:GLU164 4.7 36.5 1.0 CB A:LEU161 4.7 18.6 1.0 HA A:LEU313 4.8 15.8 1.0 HG A:LEU161 4.9 22.9 1.0 C1 A:EDO401 4.9 23.6 1.0 NE2 A:HIS232 4.9 11.8 1.0 HG3 A:LYS312 4.9 25.4 1.0

Iodine binding site 2 out of 2 in the Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Kinesin-Like Protein at 61F (KLP61F) Bound to Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:I406 b:50.0 occ:1.00 H A:ALA39 2.8 23.0 1.0 HB3 A:HIS337 3.1 24.0 1.0 HA A:SER38 3.2 24.8 1.0 H A:LYS338 3.2 21.8 1.0 HB3 A:SER38 3.6 25.8 1.0 HG2 A:LYS338 3.6 30.7 1.0 N A:ALA39 3.6 22.6 1.0 HB3 A:LYS338 3.7 26.6 1.0 N A:LYS338 3.8 21.4 1.0 HB3 A:ALA39 3.8 23.5 1.0 CA A:SER38 3.9 24.8 1.0 H A:HIS337 4.0 21.4 1.0 HD1 A:HIS337 4.1 31.8 0.0 CB A:HIS337 4.1 24.0 1.0 CB A:SER38 4.2 26.2 1.0 HB2 A:ALA39 4.2 23.6 1.0 C A:SER38 4.3 23.9 1.0 CB A:LYS338 4.3 26.3 1.0 CB A:ALA39 4.4 23.6 1.0 CG A:LYS338 4.4 30.9 1.0 CA A:LYS338 4.5 22.8 1.0 N A:HIS337 4.5 21.1 1.0 C A:HIS337 4.5 21.4 1.0 HA A:LYS338 4.5 22.9 1.0 CA A:HIS337 4.6 21.4 1.0 OG A:SER38 4.6 25.6 1.0 CA A:ALA39 4.6 22.8 1.0 HB2 A:HIS337 4.6 24.1 1.0 ND1 A:HIS337 4.7 28.6 1.0 O A:ALA39 4.7 21.6 1.0 HD3 A:LYS338 4.8 35.4 1.0 CG A:HIS337 4.9 26.4 1.0 HG A:SER38 4.9 26.9 0.0

E.J.Wojcik, D.K.Worthylake. Crystal Structure of the KLP61F Motor Domain Bound to Amppnp To Be Published.