Iodine in PDB 7n4y: The Structure of Bovine Thyroglobulin with Iodinated Tyrosines

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Iodine atom in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines (pdb code 7n4y). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 20 binding sites of Iodine where determined in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines, PDB code: 7n4y:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I24 b:115.2 occ:1.00 I3 A:T4424 0.0 115.2 1.0 C3 A:T4424 2.1 115.2 1.0 O A:ARG492 3.0 55.5 1.0 C2 A:T4424 3.0 115.2 1.0 C4 A:T4424 3.1 115.2 1.0 O4 A:T4424 3.3 115.2 1.0 CE1 A:TYR234 3.7 33.5 1.0 CG2 A:THR494 3.8 36.8 1.0 C A:ARG492 3.8 55.5 1.0 OH A:TYR234 3.9 33.5 1.0 CA A:GLY493 4.0 42.9 1.0 C1' A:T4424 4.0 115.2 1.0 C2' A:T4424 4.1 115.2 1.0 C A:GLY493 4.1 42.9 1.0 CZ A:TYR234 4.2 33.5 1.0 N A:THR494 4.2 36.8 1.0 C1 A:T4424 4.3 115.2 1.0 N A:GLY493 4.3 42.9 1.0 C5 A:T4424 4.5 115.2 1.0 CD1 A:TYR234 4.7 33.5 1.0 O A:GLY493 4.7 42.9 1.0 CA A:THR494 4.9 36.8 1.0 C6 A:T4424 4.9 115.2 1.0 CB A:ARG492 4.9 55.5 1.0 CB A:THR494 4.9 36.8 1.0 CA A:ARG492 4.9 55.5 1.0

Iodine binding site 2 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I24 b:115.2 occ:1.00 I3' A:T4424 0.0 115.2 1.0 C3' A:T4424 2.1 115.2 1.0 C4' A:T4424 3.1 115.2 1.0 C2' A:T4424 3.1 115.2 1.0 O4' A:T4424 3.2 115.2 1.0 O A:GLY233 3.3 32.4 1.0 CG A:GLU251 3.5 39.6 1.0 CD1 A:TYR234 3.7 33.5 1.0 CB A:TYR234 3.7 33.5 1.0 CB A:GLU251 3.8 39.6 1.0 CA A:GLU251 3.9 39.6 1.0 C A:GLY233 4.0 32.4 1.0 CD A:GLU251 4.1 39.6 1.0 CB A:VAL197 4.2 45.4 1.0 CG2 A:VAL197 4.2 45.4 1.0 CG A:TYR234 4.2 33.5 1.0 OE2 A:GLU251 4.2 39.6 1.0 OG A:SER232 4.2 37.0 1.0 CA A:TYR234 4.3 33.5 1.0 CB A:SER232 4.3 37.0 1.0 C1' A:T4424 4.4 115.2 1.0 C5' A:T4424 4.4 115.2 1.0 N A:TYR234 4.5 33.5 1.0 CG1 A:VAL197 4.8 45.4 1.0 C A:SER232 4.8 37.0 1.0 CE1 A:TYR234 4.8 33.5 1.0 N A:GLY233 4.8 32.4 1.0 O A:SER232 4.9 37.0 1.0 N A:GLU251 4.9 39.6 1.0 OE1 A:GLU251 4.9 39.6 1.0 C6' A:T4424 4.9 115.2 1.0 C A:GLU251 5.0 39.6 1.0 N A:LEU252 5.0 29.9 1.0

Iodine binding site 3 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I24 b:115.2 occ:1.00 I5 A:T4424 0.0 115.2 1.0 C5 A:T4424 2.1 115.2 1.0 C6 A:T4424 3.0 115.2 1.0 C4 A:T4424 3.1 115.2 1.0 O4 A:T4424 3.4 115.2 1.0 O A:MET202 3.4 64.2 1.0 C1' A:T4424 3.6 115.2 1.0 CG1 A:VAL197 3.8 45.4 1.0 C6' A:T4424 3.9 115.2 1.0 C A:MET202 3.9 64.2 1.0 CG2 A:VAL197 4.2 45.4 1.0 C2' A:T4424 4.3 115.2 1.0 C1 A:T4424 4.4 115.2 1.0 CD1 A:ILE204 4.4 45.6 1.0 N A:MET203 4.4 56.8 1.0 C3 A:T4424 4.5 115.2 1.0 CA A:MET202 4.6 64.2 1.0 CG A:GLN25 4.6 114.4 1.0 CA A:MET203 4.6 56.8 1.0 CB A:VAL197 4.7 45.4 1.0 C A:MET203 4.7 56.8 1.0 C5' A:T4424 4.7 115.2 1.0 CB A:GLN25 4.8 114.4 1.0 CB A:MET202 4.9 64.2 1.0 C2 A:T4424 4.9 115.2 1.0 O A:MET203 4.9 56.8 1.0 N A:ILE204 5.0 45.6 1.0

Iodine binding site 4 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I24 b:115.2 occ:1.00 I5' A:T4424 0.0 115.2 1.0 C5' A:T4424 2.1 115.2 1.0 C6' A:T4424 3.0 115.2 1.0 C4' A:T4424 3.1 115.2 1.0 CZ A:ARG492 3.3 55.5 1.0 O4' A:T4424 3.3 115.2 1.0 NH1 A:ARG492 3.4 55.5 1.0 NE A:ARG492 3.5 55.5 1.0 CG A:MET202 3.5 64.2 1.0 NH2 A:ARG492 3.7 55.5 1.0 CA A:THR199 3.7 55.0 1.0 O A:THR199 3.8 55.0 1.0 CG2 A:THR199 4.0 55.0 1.0 CB A:THR199 4.0 55.0 1.0 CD A:ARG492 4.2 55.5 1.0 C A:THR199 4.2 55.0 1.0 C1' A:T4424 4.4 115.2 1.0 C3' A:T4424 4.5 115.2 1.0 CB A:MET202 4.5 64.2 1.0 CA A:MET202 4.5 64.2 1.0 SD A:MET202 4.6 64.2 1.0 CE A:MET202 4.6 64.2 1.0 CG1 A:VAL197 4.7 45.4 1.0 N A:THR199 4.8 55.0 1.0 O A:ASN198 4.8 51.6 1.0 C2' A:T4424 4.9 115.2 1.0

Iodine binding site 5 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2041 b:20.0 occ:1.00 I1 A:TYI2041 0.0 20.0 1.0 CE1 A:TYI2041 2.1 20.0 1.0 CZ A:TYI2041 3.0 20.0 1.0 CD1 A:TYI2041 3.1 20.0 1.0 OH A:TYI2041 3.1 20.0 1.0 NE2 A:HIS2179 3.3 16.6 1.0 CZ A:PHE2112 3.8 16.5 1.0 CD2 A:HIS2179 3.9 16.6 1.0 CE1 A:HIS2179 3.9 16.6 1.0 NH2 A:ARG2155 4.0 19.5 1.0 CE2 A:PHE2112 4.1 16.5 1.0 CE2 A:TYI2041 4.3 20.0 1.0 CG A:TYI2041 4.4 20.0 1.0 OE1 A:GLU2180 4.5 20.9 1.0 CG A:HIS2179 4.7 16.6 1.0 ND1 A:HIS2179 4.7 16.6 1.0 CD2 A:TYI2041 4.8 20.0 1.0

Iodine binding site 6 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2041 b:20.0 occ:1.00 I2 A:TYI2041 0.0 20.0 1.0 CE2 A:TYI2041 2.1 20.0 1.0 CZ A:TYI2041 3.0 20.0 1.0 CD2 A:TYI2041 3.0 20.0 1.0 OH A:TYI2041 3.2 20.0 1.0 OG A:SER2038 3.4 35.1 1.0 OE1 A:GLU2040 3.4 56.7 1.0 CZ A:PHE1972 3.9 17.7 1.0 CG A:PRO1971 4.0 18.4 1.0 CB A:SER2038 4.0 35.1 1.0 NH1 A:ARG2155 4.1 19.5 1.0 CE1 A:PHE1972 4.2 17.7 1.0 CE1 A:TYI2041 4.3 20.0 1.0 CG A:TYI2041 4.3 20.0 1.0 CB A:PRO1971 4.4 18.4 1.0 CD A:GLU2040 4.5 56.7 1.0 CE2 A:PHE1972 4.5 17.7 1.0 CG1 A:VAL2114 4.6 20.7 1.0 NH2 A:ARG2155 4.7 19.5 1.0 CD1 A:TYI2041 4.9 20.0 1.0 CZ A:ARG2155 4.9 19.5 1.0 CB A:VAL2114 4.9 20.7 1.0

Iodine binding site 7 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2575 b:96.0 occ:1.00 I3 A:T442575 0.0 96.0 1.0 C3 A:T442575 2.1 96.0 1.0 C2 A:T442575 3.1 96.0 1.0 C4 A:T442575 3.1 96.0 1.0 O4 A:T442575 3.2 96.0 1.0 C1' A:T442575 3.7 96.0 1.0 CB A:ALA2544 3.7 46.2 1.0 C2' A:T442575 3.8 96.0 1.0 O A:ALA2540 3.8 61.0 1.0 C A:ALA2540 4.0 61.0 1.0 CD2 A:PHE2541 4.1 64.2 1.0 N A:PHE2541 4.1 64.2 1.0 CA A:PHE2541 4.2 64.2 1.0 CE2 A:PHE2578 4.2 58.0 1.0 CB A:SER2536 4.3 72.7 1.0 CE2 A:PHE2541 4.4 64.2 1.0 C5 A:T442575 4.4 96.0 1.0 C1 A:T442575 4.4 96.0 1.0 CB A:ALA2540 4.5 61.0 1.0 CD2 A:PHE2578 4.5 58.0 1.0 CG A:PHE2541 4.6 64.2 1.0 CB A:SER2475 4.7 44.4 1.0 C6' A:T442575 4.7 96.0 1.0 C3' A:T442575 4.8 96.0 1.0 CA A:ALA2540 4.9 61.0 1.0 C6 A:T442575 4.9 96.0 1.0 CB A:PHE2541 5.0 64.2 1.0

Iodine binding site 8 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2575 b:96.0 occ:1.00 I3' A:T442575 0.0 96.0 1.0 C3' A:T442575 2.1 96.0 1.0 C2' A:T442575 3.0 96.0 1.0 C4' A:T442575 3.0 96.0 1.0 O4' A:T442575 3.2 96.0 1.0 O A:ARG2534 3.5 59.4 1.0 OE2 A:GLU2530 3.6 56.8 1.0 C A:THR2535 3.8 67.5 1.0 N A:SER2536 4.0 72.7 1.0 O A:THR2535 4.0 67.5 1.0 CA A:THR2535 4.0 67.5 1.0 C1' A:T442575 4.3 96.0 1.0 C5' A:T442575 4.4 96.0 1.0 C A:ARG2534 4.4 59.4 1.0 CE A:LYS2526 4.4 50.9 1.0 CA A:SER2536 4.5 72.7 1.0 OG A:SER2475 4.5 44.4 1.0 N A:THR2535 4.6 67.5 1.0 CD A:GLU2530 4.6 56.8 1.0 CB A:SER2536 4.7 72.7 1.0 CG A:LYS2526 4.7 50.9 1.0 NZ A:LYS2526 4.8 50.9 1.0 C6' A:T442575 4.8 96.0 1.0 CG A:GLU2530 4.9 56.8 1.0 CB A:GLU2529 4.9 51.9 1.0

Iodine binding site 9 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2575 b:96.0 occ:1.00 I5 A:T442575 0.0 96.0 1.0 C5 A:T442575 2.1 96.0 1.0 C6 A:T442575 3.1 96.0 1.0 C4 A:T442575 3.1 96.0 1.0 O4 A:T442575 3.2 96.0 1.0 O A:ALA678 3.4 61.9 1.0 CE A:LYS2526 3.4 50.9 1.0 OG A:SER2579 3.5 58.6 1.0 C1' A:T442575 3.8 96.0 1.0 CD A:LYS2526 3.9 50.9 1.0 CB A:PRO677 4.0 68.6 1.0 CB A:SER2579 4.1 58.6 1.0 CG2 A:ILE2519 4.3 26.6 1.0 C2' A:T442575 4.3 96.0 1.0 N A:ALA678 4.4 61.9 1.0 C6' A:T442575 4.4 96.0 1.0 C1 A:T442575 4.4 96.0 1.0 C3 A:T442575 4.4 96.0 1.0 C A:ALA678 4.4 61.9 1.0 NZ A:LYS2526 4.5 50.9 1.0 CA A:ALA678 4.8 61.9 1.0 C A:PRO677 4.9 68.6 1.0 CB A:ALA678 4.9 61.9 1.0 C2 A:T442575 4.9 96.0 1.0

Iodine binding site 10 out of 20 in the The Structure of Bovine Thyroglobulin with Iodinated Tyrosines


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of The Structure of Bovine Thyroglobulin with Iodinated Tyrosines within 5.0Å range: probe atom residue distance (Å) B Occ A:I2575 b:96.0 occ:1.00 I5' A:T442575 0.0 96.0 1.0 C5' A:T442575 2.1 96.0 1.0 C6' A:T442575 3.0 96.0 1.0 C4' A:T442575 3.0 96.0 1.0 O4' A:T442575 3.2 96.0 1.0 CG1 A:VAL2474 3.7 38.3 1.0 CB A:LYS2526 3.9 50.9 1.0 N A:VAL2474 4.2 38.3 1.0 CA A:LYS2526 4.2 50.9 1.0 O A:ALA2522 4.3 25.4 1.0 N A:LYS2526 4.3 50.9 1.0 C3' A:T442575 4.4 96.0 1.0 C1' A:T442575 4.4 96.0 1.0 CG A:LYS2526 4.5 50.9 1.0 O A:HOH2932 4.5 32.2 1.0 CB A:ALA2522 4.6 25.4 1.0 CA A:ALA2473 4.7 31.4 1.0 CB A:VAL2474 4.7 38.3 1.0 CD A:LYS2526 4.8 50.9 1.0 CB A:ALA2473 4.9 31.4 1.0 CG1 A:VAL2525 4.9 36.0 1.0 C2' A:T442575 4.9 96.0 1.0 C A:ALA2473 4.9 31.4 1.0 OG A:SER2475 5.0 44.4 1.0 CA A:VAL2474 5.0 38.3 1.0

K.Kim, M.Kopylov, D.Bobe, K.Kelley, E.T.Eng, P.Arvan, O.B.Clarke. The Structure of Natively Iodinated Bovine Thyroglobulin Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321010056