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Iodine in PDB 7o26: Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)

Protein crystallography data

The structure of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine), PDB code: 7o26 was solved by R.Rohac, L.Martin, L.Liu, D.Basu, L.Tao, R.D.Britt, T.Rauchfuss, Y.Nicolet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.81 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.88, 79.84, 86.17, 90, 90, 90
R / Rfree (%) 17.8 / 21.7

Other elements in 7o26:

The structure of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) also contains other interesting chemical elements:

Iron (Fe) 9 atoms
Chlorine (Cl) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) (pdb code 7o26). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine), PDB code: 7o26:

Iodine binding site 1 out of 1 in 7o26

Go back to Iodine Binding Sites List in 7o26
Iodine binding site 1 out of 1 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I418

b:22.9
occ:0.51
O A:HOH748 3.1 15.6 0.7
O A:HOH748 3.2 10.5 0.3
OG1 A:THR134 3.2 14.9 1.0
NE A:ARG54 3.6 15.1 1.0
NH1 A:ARG155 3.6 13.8 1.0
SD A:MET224 3.6 16.1 0.2
CD A:ARG54 3.9 14.5 1.0
CG2 A:THR134 4.0 14.5 1.0
CD A:ARG155 4.0 16.7 1.0
CB A:THR134 4.0 12.7 1.0
CG A:ARG54 4.0 16.6 1.0
CG2 A:THR103 4.1 14.2 1.0
CZ A:ARG54 4.2 16.0 1.0
CE A:MET224 4.3 17.0 0.8
CB A:ARG54 4.5 18.4 1.0
CG2 A:VAL105 4.5 15.3 1.0
NH2 A:ARG54 4.5 16.3 1.0
CE A:MET291 4.5 21.5 0.4
CZ A:ARG155 4.6 14.5 1.0
CD1 A:LEU157 4.6 24.6 0.4
NE A:ARG155 4.7 16.6 1.0
CD2 A:LEU157 4.7 15.9 0.4
CG A:LEU157 4.8 20.1 0.4
CG A:ARG155 4.9 14.5 1.0
CB A:ARG155 4.9 14.0 1.0
NH1 A:ARG54 4.9 14.7 1.0
CE A:MET224 4.9 23.6 0.2
CG A:MET224 5.0 22.1 0.8
CG A:MET224 5.0 11.6 0.2

Reference:

Y.Nicolet, J.K.Rubach, M.C.Posewitz, P.Amara, C.Mathevon, M.Atta, M.Fontecave, J.C.Fontecilla-Camps. X-Ray Structure of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima* Journal of Biological V. 283 18861 2008CHEMISTRY.
DOI: 10.1074/JBC.M801161200
Page generated: Mon Aug 12 01:50:36 2024

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