Iodine in PDB 7qbf: Tc:CD320 in Complex with Nanobody Tc-NB34

Protein crystallography data

The structure of Tc:CD320 in Complex with Nanobody Tc-NB34, PDB code: 7qbf was solved by J.S.Bloch, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.27 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.822, 104.822, 167.46, 90, 90, 90
R / Rfree (%) 17.4 / 20.5

Other elements in 7qbf:

The structure of Tc:CD320 in Complex with Nanobody Tc-NB34 also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Calcium (Ca) 2 atoms

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iodine atom in the Tc:CD320 in Complex with Nanobody Tc-NB34 (pdb code 7qbf). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 16 binding sites of Iodine where determined in the Tc:CD320 in Complex with Nanobody Tc-NB34, PDB code: 7qbf:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 16 in 7qbf

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Iodine binding site 1 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I501

b:37.8
occ:0.60
HD22 A:ASN192 2.8 53.6 1.0
HG3 A:ARG198 2.9 64.7 1.0
HA A:ASN192 3.0 40.2 1.0
HA A:PRO195 3.1 44.0 1.0
HA A:ARG198 3.4 42.7 1.0
O A:HOH746 3.6 44.3 1.0
HB2 A:ARG198 3.6 52.8 1.0
ND2 A:ASN192 3.7 44.7 1.0
CG A:ARG198 3.8 53.9 1.0
HA A:LYS189 3.8 33.3 0.4
HA A:LYS189 3.8 33.2 0.6
HB3 A:PRO195 3.9 48.1 1.0
CA A:ASN192 4.0 33.5 1.0
CB A:ARG198 4.0 44.0 1.0
HD3 A:ARG198 4.0 74.7 1.0
CA A:PRO195 4.0 36.7 1.0
HD21 A:ASN192 4.1 53.6 1.0
CA A:ARG198 4.1 35.5 1.0
O A:PHE193 4.1 43.3 1.0
HG3 A:LYS189 4.2 42.2 0.4
HG3 A:LYS189 4.4 42.2 0.6
HB3 A:ASN192 4.4 38.6 1.0
CD A:ARG198 4.4 62.2 1.0
CB A:PRO195 4.5 40.1 1.0
HG2 A:ARG198 4.5 64.7 1.0
N A:PRO195 4.5 30.8 1.0
C A:ASN192 4.5 34.7 1.0
CB A:ASN192 4.6 32.1 1.0
H A:ASN192 4.6 38.0 1.0
O A:LYS189 4.6 28.5 0.6
O A:ASN194 4.6 31.6 1.0
O A:LYS189 4.6 28.5 0.4
CG A:ASN192 4.6 37.7 1.0
HD2 A:ARG198 4.7 74.7 1.0
C A:ASN194 4.8 36.5 1.0
HD12 A:ILE201 4.8 37.4 1.0
CA A:LYS189 4.8 27.7 0.4
HD3 A:PRO195 4.8 42.5 1.0
CA A:LYS189 4.8 27.7 0.6
N A:ASN192 4.8 31.7 1.0
O A:LEU188 4.9 28.1 1.0
O A:ASN192 4.9 31.4 1.0
N A:ARG198 4.9 33.3 1.0
HB3 A:ARG198 4.9 52.8 1.0

Iodine binding site 2 out of 16 in 7qbf

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Iodine binding site 2 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I502

b:126.0
occ:1.00
HO2 A:EDO528 2.8 51.8 1.0
O2 A:EDO528 3.2 43.2 1.0
HG3 A:GLU211 3.3 49.7 1.0
O A:HOH801 3.4 53.0 1.0
HB2 A:HIS173 3.5 38.4 1.0
HD2 A:HIS173 3.5 45.4 1.0
HB2 A:ALA178 3.7 32.9 1.0
HG21 B:THR28 3.8 48.3 1.0
HA A:VAL165 3.9 36.0 1.0
HG12 A:VAL165 3.9 39.2 1.0
HG23 B:THR28 4.1 48.3 1.0
HB A:VAL165 4.1 42.8 1.0
HB3 A:GLU211 4.1 41.5 1.0
HB1 A:ALA178 4.2 32.9 1.0
CG A:GLU211 4.2 41.4 1.0
HB2 A:GLU211 4.2 41.5 1.0
CG2 B:THR28 4.3 40.3 1.0
HG22 B:THR28 4.3 48.3 1.0
CD2 A:HIS173 4.3 37.8 1.0
CB A:ALA178 4.4 27.4 1.0
CB A:GLU211 4.4 34.6 1.0
CB A:HIS173 4.4 32.0 1.0
H A:HIS173 4.4 48.5 1.0
HG22 A:THR207 4.5 38.8 1.0
C2 A:EDO528 4.5 43.6 1.0
HG22 A:VAL208 4.7 37.3 1.0
CG1 A:VAL165 4.7 32.6 1.0
CB A:VAL165 4.7 35.7 1.0
HG B:SER27 4.7 64.3 1.0
CA A:VAL165 4.7 30.0 1.0
NE2 A:HIS169 4.7 35.8 0.5
CG A:HIS173 4.8 31.8 1.0
H21 A:EDO528 4.8 52.3 1.0
OE2 A:GLU211 4.8 50.6 1.0
HE1 A:HIS169 4.8 47.0 0.5
HG2 A:GLU211 4.8 49.7 1.0
HA A:VAL208 4.8 29.4 1.0
HB3 A:HIS173 4.9 38.4 1.0
HA A:ALA178 4.9 30.6 1.0
HG11 A:VAL165 4.9 39.2 1.0
CD A:GLU211 4.9 45.3 1.0
CE1 A:HIS169 5.0 39.1 0.5
H11 A:EDO528 5.0 60.8 1.0

Iodine binding site 3 out of 16 in 7qbf

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Iodine binding site 3 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I503

b:37.6
occ:0.47
HO2 B:EDO203 2.6 65.0 1.0
HH22 A:ARG200 2.7 35.5 1.0
HE2 A:HIS128 2.7 54.0 1.0
O A:HOH739 3.0 33.8 1.0
O2 B:EDO203 3.1 54.2 1.0
HB3 B:TYR117 3.1 49.5 1.0
HD2 A:TYR163 3.3 43.8 1.0
HD1 B:TYR115 3.3 38.7 1.0
NE2 A:HIS128 3.3 45.0 1.0
HH12 A:ARG200 3.4 38.9 1.0
NH2 A:ARG200 3.4 29.6 1.0
HB3 A:ASP159 3.4 34.6 1.0
HB2 A:TYR163 3.6 38.3 1.0
H11 A:EDO533 3.8 42.9 1.0
H21 A:EDO533 3.9 66.0 1.0
HH21 A:ARG200 3.9 35.5 1.0
HD2 B:TYR117 3.9 51.9 1.0
HE1 B:TYR115 3.9 40.8 1.0
HE1 A:HIS128 4.0 49.0 1.0
CE1 A:HIS128 4.0 40.8 1.0
NH1 A:ARG200 4.0 32.4 1.0
CD2 A:TYR163 4.1 36.5 1.0
CD1 B:TYR115 4.1 32.3 1.0
O1 A:EDO533 4.1 63.1 1.0
CB B:TYR117 4.1 41.3 1.0
H B:TYR117 4.1 53.7 1.0
CZ A:ARG200 4.1 29.6 1.0
CB A:ASP159 4.3 28.8 1.0
CD2 A:HIS128 4.3 39.8 1.0
C1 A:EDO533 4.3 35.8 1.0
CG A:ASP159 4.3 29.8 1.0
HB2 B:TYR117 4.4 49.5 1.0
CE1 B:TYR115 4.4 34.0 1.0
O A:ASP159 4.4 30.7 1.0
C2 B:EDO203 4.4 51.5 1.0
HD2 A:HIS128 4.4 47.7 1.0
OD2 A:ASP159 4.5 29.3 1.0
CB A:TYR163 4.5 31.9 1.0
HO1 A:EDO533 4.5 75.8 1.0
C2 A:EDO533 4.6 55.0 1.0
H22 B:EDO203 4.6 61.8 1.0
O B:TYR117 4.6 38.9 1.0
H B:ASP116 4.6 46.2 1.0
CD2 B:TYR117 4.7 43.2 1.0
N B:TYR117 4.7 44.7 1.0
CG A:TYR163 4.7 30.6 1.0
OD1 A:ASP159 4.7 30.1 1.0
HH11 A:ARG200 4.8 38.9 1.0
HA A:ASP159 4.8 31.5 1.0
H21 B:EDO203 4.8 61.8 1.0
HA B:TYR115 4.9 40.1 1.0
CG B:TYR117 4.9 45.6 1.0
CA B:TYR117 4.9 43.4 1.0
HE2 A:TYR163 4.9 39.8 1.0
H A:TYR163 5.0 36.9 1.0
CE2 A:TYR163 5.0 33.1 1.0
O A:HOH710 5.0 34.9 1.0
CA A:ASP159 5.0 26.2 1.0
C A:ASP159 5.0 25.7 1.0
HB2 A:ASP159 5.0 34.6 1.0
HA A:TYR163 5.0 33.7 1.0

Iodine binding site 4 out of 16 in 7qbf

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Iodine binding site 4 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I504

b:74.2
occ:0.42
H A:ASP9 2.7 53.2 1.0
HD21 A:LEU257 3.2 73.3 1.0
HA A:MET8 3.2 44.1 1.0
HH22 A:ARG253 3.3 51.0 1.0
HG2 A:MET8 3.4 62.3 1.0
HD11 A:LEU257 3.4 67.2 1.0
N A:ASP9 3.5 44.3 1.0
HB2 A:ASP9 3.5 75.5 1.0
HD22 A:LEU257 3.6 73.3 1.0
HD13 A:LEU257 3.7 67.2 1.0
CD2 A:LEU257 3.8 61.1 1.0
NH2 A:ARG253 3.9 42.5 1.0
CD1 A:LEU257 3.9 56.0 1.0
HB3 A:ASP9 4.0 75.5 1.0
CA A:MET8 4.0 36.8 1.0
HB3 A:MET8 4.0 48.3 1.0
CB A:ASP9 4.1 62.9 1.0
C A:MET8 4.2 38.8 1.0
CG A:MET8 4.2 52.0 1.0
HH21 A:ARG253 4.2 51.0 1.0
HH12 A:ARG253 4.3 49.5 1.0
CB A:MET8 4.3 40.3 1.0
CA A:ASP9 4.3 49.4 1.0
CG A:LEU257 4.5 56.9 1.0
HD23 A:LEU257 4.6 73.3 1.0
HA A:ASP9 4.6 59.2 1.0
CZ A:ARG253 4.7 44.2 1.0
NH1 A:ARG253 4.8 41.2 1.0
HD22 A:LEU12 4.8 63.9 1.0
HD12 A:LEU257 4.8 67.2 1.0
HG3 A:MET8 4.8 62.3 1.0
O A:GLU7 4.9 39.2 1.0
HD23 A:LEU12 5.0 63.9 1.0

Iodine binding site 5 out of 16 in 7qbf

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Iodine binding site 5 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I505

b:45.4
occ:0.52
H A:LEU388 2.5 38.0 1.0
HE21 A:GLN389 2.9 42.6 1.0
HE1 A:TYR394 3.0 50.3 1.0
HD1 A:TYR394 3.0 43.8 1.0
HB2 A:LEU388 3.3 36.3 1.0
N A:LEU388 3.4 31.7 1.0
O A:HOH816 3.4 45.1 1.0
HG3 A:GLN389 3.5 37.5 1.0
CE1 A:TYR394 3.6 41.9 1.0
HA A:LEU387 3.6 33.0 1.0
CD1 A:TYR394 3.6 36.5 1.0
HG A:LEU388 3.8 43.8 1.0
NE2 A:GLN389 3.8 35.5 1.0
HD22 A:LEU387 3.9 40.7 1.0
H A:GLN389 3.9 30.9 1.0
HB3 A:LEU387 3.9 34.2 1.0
CB A:LEU388 4.0 30.2 1.0
HE A:ARG381 4.0 54.1 1.0
CA A:LEU388 4.1 30.1 1.0
CA A:LEU387 4.3 27.5 1.0
N A:GLN389 4.3 25.8 1.0
HE22 A:GLN389 4.3 42.6 1.0
HB2 A:GLN389 4.3 34.2 1.0
C A:LEU387 4.3 30.7 1.0
CG A:GLN389 4.3 31.2 1.0
CG A:LEU388 4.4 36.5 1.0
HD12 A:LEU388 4.4 45.8 1.0
C A:LEU388 4.5 26.3 1.0
CB A:LEU387 4.6 28.5 1.0
CD A:GLN389 4.6 36.5 1.0
HD23 A:LEU387 4.6 40.7 1.0
CD2 A:LEU387 4.7 33.9 1.0
CB A:GLN389 4.8 28.5 1.0
CZ A:TYR394 4.8 38.0 1.0
NE A:ARG381 4.8 45.1 1.0
CG A:TYR394 4.8 34.9 1.0
HB3 A:LEU388 4.9 36.3 1.0
HD3 A:ARG381 4.9 54.3 1.0
CD1 A:LEU388 5.0 38.2 1.0
HB2 A:TYR394 5.0 38.9 1.0
HH21 A:ARG381 5.0 63.0 1.0

Iodine binding site 6 out of 16 in 7qbf

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Iodine binding site 6 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I506

b:43.0
occ:0.37
H A:TYR136 2.5 25.7 1.0
HH22 A:ARG374 2.8 65.9 1.0
HD2 A:TYR136 2.8 34.9 1.0
HH12 A:ARG374 3.0 68.7 1.0
O A:HOH703 3.1 36.2 1.0
HA A:SER135 3.1 27.7 1.0
HH2 A:TRP409 3.3 47.2 1.0
N A:TYR136 3.3 21.4 1.0
HZ3 A:TRP409 3.3 52.7 1.0
HB2 A:SER135 3.4 32.4 1.0
O A:HOH741 3.4 26.2 1.0
HB2 A:TYR136 3.5 28.4 1.0
NH2 A:ARG374 3.6 54.9 1.0
CH2 A:TRP409 3.6 39.4 1.0
CD2 A:TYR136 3.6 29.1 1.0
CZ3 A:TRP409 3.7 43.9 1.0
NH1 A:ARG374 3.8 57.3 1.0
CA A:SER135 3.8 23.1 1.0
HG2 A:PRO132 3.8 41.9 1.0
CB A:SER135 4.0 27.0 1.0
C A:SER135 4.0 24.8 1.0
CB A:TYR136 4.1 23.6 1.0
CZ A:ARG374 4.2 60.8 1.0
HH21 A:ARG374 4.2 65.9 1.0
HG3 A:PRO132 4.3 41.9 1.0
CA A:TYR136 4.3 22.1 1.0
HB3 A:SER135 4.3 32.4 1.0
CG A:TYR136 4.3 25.2 1.0
CG A:PRO132 4.5 34.9 1.0
HH11 A:ARG374 4.5 68.7 1.0
HE2 A:TYR136 4.5 30.8 1.0
HE1 A:HIS173 4.5 42.9 1.0
H A:TYR137 4.6 27.9 1.0
CE2 A:TYR136 4.6 25.6 1.0
HD2 A:PRO132 4.6 38.8 1.0
CZ2 A:TRP409 4.7 38.1 1.0
CE3 A:TRP409 4.7 45.4 1.0
HG21 A:THR177 4.8 33.7 1.0
HA A:TYR136 4.9 26.5 1.0
ND1 A:HIS173 5.0 32.8 1.0
O A:THR134 5.0 30.1 1.0
O A:HOH612 5.0 31.5 1.0

Iodine binding site 7 out of 16 in 7qbf

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Iodine binding site 7 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I507

b:208.2
occ:1.00
HE3 A:MET367 2.9 76.3 1.0
HG23 A:THR351 2.9 67.0 1.0
HE2 A:MET367 3.4 76.3 1.0
CE A:MET367 3.6 63.6 1.0
CG2 A:THR351 3.7 55.9 1.0
OG1 A:THR351 3.7 43.1 1.0
HG21 A:THR351 3.7 67.0 1.0
HG1 A:THR351 3.8 51.7 1.0
HA A:MET367 3.9 48.5 1.0
HA A:PHE350 4.0 57.6 1.0
H A:THR351 4.0 51.9 1.0
HE1 A:MET367 4.0 76.3 1.0
HG2 A:MET367 4.1 60.0 1.0
N A:THR351 4.2 43.2 1.0
C A:GLY349 4.2 52.8 1.0
HA2 A:GLY349 4.2 60.7 1.0
O A:GLY349 4.2 42.4 1.0
N A:PHE350 4.3 48.9 1.0
CB A:THR351 4.3 41.1 1.0
C A:PHE350 4.3 47.1 1.0
HB3 A:MET367 4.4 52.9 1.0
CA A:PHE350 4.4 48.0 1.0
HG22 A:THR351 4.5 67.0 1.0
H A:PHE350 4.6 58.7 1.0
O A:HOH875 4.7 63.4 1.0
CA A:MET367 4.7 40.4 1.0
CA A:GLY349 4.7 50.6 1.0
CG A:MET367 4.8 50.0 1.0
CB A:MET367 4.8 44.1 1.0
O A:PHE350 4.9 45.2 1.0
CA A:THR351 4.9 43.1 1.0

Iodine binding site 8 out of 16 in 7qbf

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Iodine binding site 8 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I508

b:52.1
occ:0.43
H A:GLY368 2.4 46.8 1.0
HG3 A:GLU353 2.9 62.0 1.0
HA A:TYR352 3.0 43.1 1.0
OG A:SER365 3.0 39.8 1.0
HG A:SER365 3.0 47.7 1.0
N A:GLY368 3.2 39.0 1.0
HA2 A:GLY368 3.3 47.0 1.0
HB3 A:SER365 3.3 41.1 1.0
HG1 A:THR351 3.5 51.7 1.0
CA A:TYR352 3.6 35.9 1.0
OG1 A:THR351 3.6 43.1 1.0
H A:MET367 3.6 46.2 1.0
N A:TYR352 3.6 39.6 1.0
CB A:SER365 3.7 34.3 1.0
C A:TYR352 3.7 40.0 1.0
CA A:GLY368 3.8 39.2 1.0
N A:MET367 3.8 38.5 1.0
HB A:THR351 3.8 49.4 1.0
CG A:GLU353 3.8 51.6 1.0
H A:TYR352 3.9 47.5 1.0
C A:THR351 3.9 37.4 1.0
H A:GLU353 4.0 42.1 1.0
N A:GLU353 4.0 35.1 1.0
O A:THR351 4.0 35.6 1.0
C A:SER365 4.1 33.1 1.0
HA A:VAL366 4.1 36.6 1.0
O A:SER365 4.2 32.7 1.0
C A:VAL366 4.2 33.5 1.0
CB A:THR351 4.2 41.1 1.0
N A:VAL366 4.2 32.3 1.0
HG2 A:GLU353 4.2 62.0 1.0
O A:TYR352 4.2 39.2 1.0
HA A:MET367 4.2 48.5 1.0
C A:MET367 4.2 37.1 1.0
CA A:MET367 4.3 40.4 1.0
O A:HOH774 4.3 48.6 1.0
CD A:GLU353 4.4 77.4 1.0
CA A:VAL366 4.4 30.5 1.0
HB2 A:SER365 4.5 41.1 1.0
H A:VAL366 4.5 38.7 1.0
HA3 A:GLY368 4.5 47.0 1.0
CA A:SER365 4.5 31.9 1.0
C A:GLY368 4.6 40.8 1.0
H A:LYS369 4.6 41.6 1.0
OE2 A:GLU353 4.7 90.6 1.0
CA A:THR351 4.7 43.1 1.0
HB2 A:GLU353 4.7 39.2 1.0
CB A:GLU353 4.8 32.7 1.0
O A:VAL366 4.8 32.4 1.0
N A:LYS369 4.9 34.7 1.0
OE1 A:GLU353 5.0 87.7 1.0
CB A:TYR352 5.0 35.8 1.0
CA A:GLU353 5.0 34.9 1.0

Iodine binding site 9 out of 16 in 7qbf

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Iodine binding site 9 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I509

b:153.6
occ:1.00
HH12 A:ARG108 2.5 55.9 1.0
HH22 A:ARG108 2.7 75.2 1.0
NH1 A:ARG108 3.3 46.6 1.0
OD2 A:ASP107 3.4 33.9 1.0
NH2 A:ARG108 3.5 62.7 1.0
HB2 C:PRO156 3.7 36.0 1.0
HB2 A:ASP107 3.8 36.3 1.0
O C:PRO159 3.8 43.7 1.0
HA C:PRO159 3.8 57.0 1.0
HA A:HIS104 3.9 41.3 1.0
CZ A:ARG108 3.9 65.9 1.0
HB3 A:ASP107 3.9 36.3 1.0
HH11 A:ARG108 4.0 55.9 1.0
HG2 C:PRO156 4.0 32.6 1.0
CB A:ASP107 4.2 30.3 1.0
O C:HOH303 4.2 44.0 1.0
HH21 A:ARG108 4.2 75.2 1.0
HG3 C:PRO156 4.2 32.6 1.0
CG A:ASP107 4.3 29.7 1.0
OG C:SER161 4.3 37.8 1.0
CG C:PRO156 4.4 27.2 1.0
HB3 A:HIS104 4.4 43.5 1.0
HG C:SER161 4.5 45.4 1.0
CB C:PRO156 4.5 30.0 1.0
O C:CYS158 4.5 30.3 1.0
HB2 A:HIS104 4.6 43.5 1.0
C C:PRO159 4.6 45.7 1.0
CA C:PRO159 4.6 47.5 1.0
O A:HOH817 4.7 54.5 1.0
O C:PRO156 4.7 30.8 1.0
CA A:HIS104 4.7 34.4 1.0
CB A:HIS104 4.8 36.2 1.0
HB3 C:PRO156 4.9 36.0 1.0

Iodine binding site 10 out of 16 in 7qbf

Go back to Iodine Binding Sites List in 7qbf
Iodine binding site 10 out of 16 in the Tc:CD320 in Complex with Nanobody Tc-NB34


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Tc:CD320 in Complex with Nanobody Tc-NB34 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I510

b:118.0
occ:1.00
HG3 A:ARG108 3.2 40.8 1.0
ND1 A:HIS104 3.5 40.4 1.0
HA A:LYS105 3.5 30.2 1.0
HD13 A:LEU67 3.6 32.9 1.0
HG2 A:LYS105 3.6 35.4 1.0
HB3 A:LEU67 3.7 34.2 1.0
O A:HOH755 3.9 54.7 1.0
HE1 A:HIS104 3.9 50.2 1.0
HD22 A:LEU67 3.9 35.1 1.0
CE1 A:HIS104 4.1 41.8 1.0
CG A:ARG108 4.1 34.0 1.0
HG2 A:ARG108 4.2 40.8 1.0
O A:HIS104 4.3 29.7 1.0
CA A:LYS105 4.4 25.2 1.0
HB2 A:ARG108 4.4 34.0 1.0
HG3 A:LYS105 4.4 35.4 1.0
CG A:LYS105 4.4 29.5 1.0
O A:HOH865 4.4 38.9 1.0
CD1 A:LEU67 4.5 27.4 1.0
HB2 A:HIS104 4.5 43.5 1.0
C A:HIS104 4.5 31.2 1.0
N A:LYS105 4.5 29.1 1.0
CB A:LEU67 4.5 28.5 1.0
CG A:HIS104 4.6 43.4 1.0
CD2 A:LEU67 4.8 29.2 1.0
CB A:ARG108 4.8 28.4 1.0
HH21 A:ARG108 4.8 75.2 1.0
CG A:LEU67 4.8 27.5 1.0
HB2 A:LEU67 4.8 34.2 1.0
HD12 A:LEU67 4.9 32.9 1.0
HD2 A:ARG108 4.9 51.7 1.0
H A:LYS105 4.9 34.9 1.0
H A:GLY68 5.0 50.9 1.0
CB A:LYS105 5.0 25.4 1.0

Reference:

J.S.Bloch, J.M.Sequeira, A.S.Ramirez, E.V.Quadros, K.P.Locher. Generation of Nanobodies Targeting the Human, Transcobalamin-Mediated Vitamin B 12 Uptake Route. Faseb J. V. 36 22222 2022.
ISSN: ESSN 1530-6860
PubMed: 35218573
DOI: 10.1096/FJ.202101376RR
Page generated: Wed Apr 5 09:16:49 2023

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