Iodine in PDB 7sdt: [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdt was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.11 / 4.00
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.881, 105.881, 94.823, 90, 90, 120
R / Rfree (%)	19.6 / 21.2

The structure of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Silver

(Ag)

1 atom

The binding sites of Iodine atom in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdt). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdt:

Iodine binding site 1 out of 1 in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:I12 b:236.7 occ:1.00 I5 A:5IU12 0.0 236.7 1.0 C5 A:5IU12 2.1 245.4 1.0 C6 A:5IU12 3.0 244.0 1.0 C4 A:5IU12 3.1 252.3 1.0 H6 A:5IU12 3.1 61.1 1.0 O4 A:5IU12 3.2 253.1 1.0 C6 A:DT11 3.5 239.8 1.0 C2' A:DT11 3.5 222.5 1.0 N1 A:DT11 3.8 241.0 1.0 C5 A:DT11 3.8 245.1 1.0 N1 A:5IU12 4.3 250.3 1.0 N3 A:5IU12 4.3 258.3 1.0 C1' A:DT11 4.3 234.0 1.0 C7 A:DT11 4.3 243.5 1.0 C2 A:DT11 4.4 248.4 1.0 C4 A:DT11 4.4 252.4 1.0 C7 A:DT13 4.5 203.0 1.0 O4 A:DT13 4.5 218.0 1.0 N3 A:DT11 4.6 253.8 1.0 C2 A:5IU12 4.8 258.4 1.0 C3' A:DT11 4.8 217.1 1.0 AG B:AG101 4.8 162.6 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.