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Iodine in PDB 7se0: [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

Protein crystallography data

The structure of [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7se0 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.73 / 3.93
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 105.606, 105.606, 93.758, 90, 90, 120
R / Rfree (%) 20.7 / 22.9

Other elements in 7se0:

The structure of [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Mercury (Hg) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7se0). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7se0:

Iodine binding site 1 out of 1 in 7se0

Go back to Iodine Binding Sites List in 7se0
Iodine binding site 1 out of 1 in the [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of [Iu:HG2+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I12

b:278.3
occ:1.00
I5 A:5IU12 0.0 278.3 1.0
C5 A:5IU12 2.1 277.6 1.0
C6 A:5IU12 3.1 273.8 1.0
C4 A:5IU12 3.1 281.0 1.0
O4 A:5IU12 3.3 284.4 1.0
N1 A:DT11 3.9 247.7 1.0
C2' A:DT11 3.9 238.8 1.0
C6 A:DT11 3.9 249.4 1.0
C2 A:DT11 4.0 250.7 1.0
O4 A:DT13 4.0 242.3 1.0
N3 A:DT11 4.1 255.6 1.0
C5 A:DT11 4.2 254.5 1.0
C4 A:DT11 4.3 257.4 1.0
N1 A:5IU12 4.3 272.9 1.0
N3 A:5IU12 4.3 282.1 1.0
C7 A:DT13 4.4 233.9 1.0
C1' A:DT11 4.4 242.2 1.0
O2 A:DT11 4.5 249.7 1.0
OP1 A:5IU12 4.6 265.1 1.0
C4 A:DT13 4.7 240.9 1.0
C2 A:5IU12 4.8 277.2 1.0
C5 A:DT13 4.9 236.6 1.0
O4 A:DT11 4.9 261.0 1.0
C7 A:DT11 5.0 257.4 1.0
OP2 A:5IU12 5.0 267.8 1.0

Reference:

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.
Page generated: Mon Aug 12 02:09:07 2024

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