Iodine in PDB 7tlw: Murine Meteorin-Like C-Terminal Ntr Domain

The structure of Murine Meteorin-Like C-Terminal Ntr Domain, PDB code: 7tlw was solved by C.Quan, J.W.Arndt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	9.99 / 1.75
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.999, 80.162, 51.585, 90, 90, 90
R / Rfree (%)	18.4 / 20.6

The binding sites of Iodine atom in the Murine Meteorin-Like C-Terminal Ntr Domain (pdb code 7tlw). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Murine Meteorin-Like C-Terminal Ntr Domain, PDB code: 7tlw:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the Murine Meteorin-Like C-Terminal Ntr Domain


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Murine Meteorin-Like C-Terminal Ntr Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:37.4 occ:0.52 H A:MET265 2.6 60.2 1.0 HG2 A:GLN247 3.2 45.5 1.0 HB2 A:MET265 3.3 38.4 1.0 HE2 A:PHE246 3.4 26.6 1.0 HE21 A:GLN247 3.5 57.8 1.0 N A:MET265 3.6 50.1 1.0 HA A:ASN264 3.7 44.6 1.0 HZ A:PHE243 3.8 36.0 1.0 HG2 A:MET265 4.0 51.6 1.0 HG13 A:ILE263 4.0 55.4 1.0 CG A:GLN247 4.1 37.9 1.0 CB A:MET265 4.1 32.0 1.0 O A:GLU266 4.1 80.4 1.0 CE2 A:PHE246 4.2 22.2 1.0 H A:GLU266 4.2 66.1 1.0 HD2 A:TYR250 4.2 29.9 1.0 HA A:GLN247 4.3 22.8 1.0 HG3 A:GLN247 4.3 45.5 1.0 CA A:MET265 4.3 45.2 1.0 NE2 A:GLN247 4.3 48.2 1.0 CZ A:PHE243 4.5 30.0 1.0 HD11 A:ILE263 4.5 42.8 1.0 HD2 A:PHE246 4.5 21.8 1.0 N A:GLU266 4.6 55.0 1.0 CA A:ASN264 4.6 37.1 1.0 C A:ASN264 4.6 34.5 1.0 CG A:MET265 4.6 43.0 1.0 C A:MET265 4.6 40.1 1.0 HE1 A:PHE243 4.6 27.5 1.0 CD2 A:TYR250 4.6 24.9 1.0 CD2 A:PHE246 4.8 18.1 1.0 O A:ILE263 4.8 32.2 1.0 OD1 A:ASN264 4.8 62.5 1.0 CD A:GLN247 4.8 43.4 1.0 HB3 A:TYR250 4.8 28.2 1.0 CG1 A:ILE263 4.9 46.1 1.0 CE1 A:PHE243 4.9 22.9 1.0 HE2 A:TYR250 4.9 38.3 1.0 HG12 A:ILE263 5.0 55.4 1.0 HE22 A:GLN247 5.0 57.8 1.0 CE2 A:TYR250 5.0 31.9 1.0

Iodine binding site 2 out of 3 in the Murine Meteorin-Like C-Terminal Ntr Domain


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Murine Meteorin-Like C-Terminal Ntr Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:25.9 occ:0.29 H A:ALA240 2.4 21.3 1.0 H A:CYS146 2.5 29.6 1.0 HA A:PRO145 3.0 51.5 1.0 N A:CYS146 3.2 24.6 1.0 N A:ALA240 3.3 17.8 1.0 HB2 A:CYS146 3.3 26.3 1.0 O A:HOH435 3.3 32.9 1.0 HB3 A:PRO145 3.4 44.9 1.0 HD3 A:PRO241 3.4 19.0 1.0 HA A:CYS239 3.4 25.6 1.0 HB3 A:CYS239 3.6 25.6 1.0 CA A:PRO145 3.7 42.9 1.0 HB2 A:PRO145 3.7 44.9 1.0 N A:PRO241 3.8 15.1 1.0 C A:ALA240 3.8 14.4 1.0 CB A:PRO145 3.8 37.4 1.0 C A:PRO145 3.9 36.5 1.0 HA A:PRO241 4.0 21.2 1.0 CB A:CYS146 4.0 21.9 1.0 CD A:PRO241 4.1 15.8 1.0 CA A:CYS239 4.1 21.3 1.0 CA A:ALA240 4.1 16.2 1.0 CA A:CYS146 4.1 21.5 1.0 O A:ALA240 4.2 17.1 1.0 C A:CYS239 4.2 20.5 1.0 SG A:CYS146 4.2 24.7 0.8 CB A:CYS239 4.3 21.3 1.0 CA A:PRO241 4.3 17.7 1.0 HB3 A:PRO241 4.4 21.8 1.0 HB3 A:ALA240 4.5 28.0 1.0 O A:CYS146 4.5 21.9 1.0 O A:HOH434 4.6 58.3 1.0 HD2 A:PRO241 4.7 19.0 1.0 CB A:PRO241 4.8 18.1 1.0 HB3 A:CYS146 4.8 26.3 1.0 C A:CYS146 4.9 26.1 1.0 HA A:ALA240 4.9 19.5 1.0 HA A:CYS146 4.9 25.8 1.0 CB A:ALA240 4.9 23.3 1.0 HG22 A:VAL151 4.9 19.4 1.0

Iodine binding site 3 out of 3 in the Murine Meteorin-Like C-Terminal Ntr Domain


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Murine Meteorin-Like C-Terminal Ntr Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:I303 b:67.4 occ:0.25 HE21 A:GLN176 2.8 44.7 1.0 HD23 A:LEU213 3.3 35.5 1.0 HB3 A:LEU213 3.5 33.7 1.0 HG3 A:GLN214 3.5 64.2 1.0 HB3 A:GLN176 3.6 38.2 1.0 NE2 A:GLN176 3.6 37.3 1.0 OE1 A:GLN214 3.7 58.6 1.0 CD A:GLN214 3.8 68.7 1.0 HE22 A:GLN176 4.0 44.7 1.0 HG2 A:GLN176 4.0 41.1 1.0 CD2 A:LEU213 4.2 29.7 1.0 CG A:GLN214 4.2 53.4 1.0 NE2 A:GLN214 4.3 62.8 1.0 CB A:LEU213 4.4 28.2 1.0 CB A:GLN176 4.4 31.8 1.0 HD21 A:LEU213 4.5 35.5 1.0 HE22 A:GLN214 4.5 75.4 1.0 CG A:GLN176 4.5 34.3 1.0 HG A:LEU213 4.5 33.7 1.0 CD A:GLN176 4.6 33.9 1.0 H A:GLN214 4.6 38.6 1.0 CG A:LEU213 4.6 28.2 1.0 HG2 A:GLN214 4.7 64.2 1.0 HA A:GLN176 4.7 24.0 1.0 HE21 A:GLN214 4.8 75.4 1.0 HB2 A:LEU213 4.8 33.7 1.0 HD22 A:LEU213 4.8 35.5 1.0 N A:GLN214 5.0 32.1 1.0

C.Quan, J.W.Arndt, B.J.Gong, J.Dolnikova, R.B.Pepinsky. Identification and Structure Determination of Stable Domains of Meteorin and Meteorin-Like To Be Published.