Atomistry » Iodine » PDB 7se5-7z76 » 7v8t
Atomistry »
  Iodine »
    PDB 7se5-7z76 »
      7v8t »

Iodine in PDB 7v8t: Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.

Enzymatic activity of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.

All present enzymatic activity of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.:
4.1.2.52;

Protein crystallography data

The structure of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa., PDB code: 7v8t was solved by P.W.Seo, J.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.54 / 2.48
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.952, 131.077, 84.202, 90, 106.8, 90
R / Rfree (%) 18.6 / 22.7

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. (pdb code 7v8t). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 10 binding sites of Iodine where determined in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa., PDB code: 7v8t:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 1 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:57.3
occ:1.00
 O A:HOH417 3.6 39.8 1.0
CB A:ALA177 3.8 33.2 1.0
CD A:PRO189 4.0 39.4 1.0
CG A:PRO189 4.0 39.5 1.0
CA A:GLY187 4.1 36.0 1.0
CA A:ALA177 4.2 32.6 1.0
C A:GLY187 4.6 40.8 1.0
CD1 D:LEU138 4.6 39.6 1.0
N A:GLY187 4.6 45.9 1.0
CG1 D:VAL121 4.6 39.7 1.0
CB A:PRO189 5.0 39.0 1.0
O A:GLY187 5.0 32.0 1.0

Iodine binding site 2 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 2 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I303

b:106.3
occ:1.00
 O C:HOH457 3.7 44.2 1.0
CA A:GLY122 3.9 47.0 1.0
CB A:ALA124 4.2 61.1 1.0
C A:GLY122 4.3 50.4 1.0
O A:GLY122 4.5 47.7 1.0
CB C:ALA177 4.6 51.9 1.0
N A:ALA124 4.6 46.8 1.0
O A:VAL121 4.7 50.0 1.0
N A:SER123 4.8 54.3 1.0
CD2 C:LEU215 4.9 39.6 1.0
N A:GLY122 4.9 48.1 1.0
CA A:ALA124 4.9 49.5 1.0

Iodine binding site 3 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 3 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I300

b:60.3
occ:1.00
 O B:HOH406 3.5 43.2 1.0
CD B:PRO189 3.9 35.6 1.0
CG B:PRO189 4.0 30.8 1.0
CB B:ALA177 4.1 37.3 1.0
CA B:GLY187 4.1 40.0 1.0
CA B:ALA177 4.2 37.5 1.0
CD1 F:LEU138 4.3 40.9 1.0
C B:GLY187 4.5 35.6 1.0
N B:GLY187 4.6 39.0 1.0
O B:GLY187 4.8 40.3 1.0

Iodine binding site 4 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 4 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I301

b:115.1
occ:1.00
 O E:HOH446 3.1 40.5 1.0
CA B:GLY122 4.2 35.3 1.0
O E:HOH443 4.4 40.0 1.0
CB B:ALA124 4.4 57.9 1.0
C B:GLY122 4.6 43.7 1.0
CB E:ALA177 4.6 46.4 1.0
CD2 E:LEU215 4.8 38.8 1.0
O B:VAL121 4.9 44.5 1.0
O B:GLY122 4.9 42.3 1.0
N B:ALA124 4.9 45.2 1.0

Iodine binding site 5 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 5 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I300

b:80.1
occ:1.00
 CB C:ALA177 3.8 51.9 1.0
CD C:PRO189 3.8 45.6 1.0
CG C:PRO189 3.9 43.7 1.0
CA C:ALA177 4.0 49.4 1.0
CA C:GLY187 4.2 44.4 1.0
CD1 A:LEU138 4.3 44.4 1.0
C C:GLY187 4.6 57.4 1.0
N C:GLY187 4.6 46.9 1.0
N C:ALA177 4.9 48.5 1.0
CB C:PRO189 4.9 45.6 1.0
CG1 A:VAL121 4.9 44.3 1.0
O C:GLY187 5.0 62.7 1.0

Iodine binding site 6 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 6 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I301

b:83.4
occ:1.00
 O C:HOH447 3.6 41.5 1.0
CB C:ALA124 4.1 55.6 1.0
CA C:GLY122 4.2 43.8 1.0
CB D:ALA177 4.5 43.5 1.0
C C:GLY122 4.5 51.4 1.0
N C:ALA124 4.6 49.3 1.0
CD2 D:LEU215 4.8 34.8 1.0
O C:GLY122 4.8 49.3 1.0
CA C:ALA124 4.9 51.6 1.0
O C:VAL121 4.9 42.8 1.0
N C:SER123 4.9 52.7 1.0

Iodine binding site 7 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 7 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:I300

b:89.8
occ:1.00
 CB D:ALA177 4.0 43.5 1.0
CD1 C:LEU138 4.1 45.3 1.0
O C:HOH447 4.1 41.5 1.0
CD D:PRO189 4.1 44.2 1.0
CG D:PRO189 4.1 40.7 1.0
CA D:ALA177 4.2 42.7 1.0
CA D:GLY187 4.2 49.0 1.0
N D:GLY187 4.6 48.2 1.0
C D:GLY187 4.7 46.2 1.0

Iodine binding site 8 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 8 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:I301

b:64.7
occ:1.00
 CG E:PRO189 3.6 50.3 1.0
CB E:ALA177 3.9 46.4 1.0
CD E:PRO189 4.0 51.8 1.0
CA E:GLY187 4.1 48.9 1.0
CA E:ALA177 4.1 42.2 1.0
C E:GLY187 4.5 51.3 1.0
N E:GLY187 4.5 50.3 1.0
CD1 B:LEU138 4.6 45.1 1.0
CG1 B:VAL121 4.8 41.7 1.0
O E:GLY187 4.9 49.7 1.0
O E:HOH443 5.0 40.0 1.0
N E:ASN188 5.0 52.2 1.0

Iodine binding site 9 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 9 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:I302

b:104.8
occ:1.00
 CB E:ALA124 4.0 61.9 1.0
CA E:GLY122 4.1 47.7 1.0
C E:GLY122 4.4 52.0 1.0
N E:ALA124 4.5 51.7 1.0
O E:GLY122 4.6 43.2 1.0
CB F:ALA177 4.7 47.1 1.0
CD2 F:LEU215 4.8 34.1 1.0
CA E:ALA124 4.8 58.8 1.0
N E:SER123 4.8 61.2 1.0
O E:VAL121 4.9 53.4 1.0
N E:LEU125 4.9 54.6 1.0

Iodine binding site 10 out of 10 in 7v8t

Go back to Iodine Binding Sites List in 7v8t
Iodine binding site 10 out of 10 in the Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of Class II Pyruvate Aldolase From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:I302

b:96.8
occ:1.00
 CB F:ALA177 3.8 47.1 1.0
CA F:ALA177 4.0 52.3 1.0
CD F:PRO189 4.2 53.5 1.0
CA F:GLY187 4.2 61.9 1.0
CD1 E:LEU138 4.2 60.0 1.0
CG F:PRO189 4.3 51.4 1.0
N F:GLY187 4.6 65.0 1.0
C F:GLY187 4.6 64.6 1.0
O F:ALA177 4.8 54.9 1.0
CG1 E:VAL121 4.8 49.4 1.0
C F:ALA177 4.9 51.5 1.0
N F:ALA177 4.9 55.3 1.0

Reference:

Y.J.Jeong, T.K.Le, P.W.Seo, S.B.Ju, J.S.Kim, S.J.Yeom. Biochemical and Molecular Characterization of Pyruvate Aldolase For the Synthesis of 2-Keto-4-Hydroxybutyrate. To Be Published.
Page generated: Mon Aug 12 02:15:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy