Atomistry » Iodine » PDB 7se5-7z76 » 7yuz
Atomistry »
  Iodine »
    PDB 7se5-7z76 »
      7yuz »

Iodine in PDB 7yuz: Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784

Protein crystallography data

The structure of Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784, PDB code: 7yuz was solved by M.Irie, T.A.Fukami, M.Tanada, A.Ohta, T.Torizawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.45 / 1.88
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 66.012, 66.012, 86.33, 90, 90, 120
R / Rfree (%) 25.9 / 29.9

Other elements in 7yuz:

The structure of Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784 (pdb code 7yuz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784, PDB code: 7yuz:

Iodine binding site 1 out of 1 in 7yuz

Go back to Iodine Binding Sites List in 7yuz
Iodine binding site 1 out of 1 in the Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I203

b:49.4
occ:0.50
NE2 A:GLN43 3.4 59.5 1.0
O A:HOH318 3.8 47.9 1.0
O A:GLN43 3.9 51.6 1.0
CG A:GLN43 4.0 56.0 1.0
C A:GLN43 4.2 51.6 1.0
CD A:GLN43 4.2 59.8 1.0
CB A:GLN43 4.3 53.3 1.0
N A:VAL44 4.5 51.9 1.0
O A:HOH326 4.5 46.1 1.0
CA A:VAL44 4.5 52.6 1.0
CG2 A:VAL45 4.6 53.6 1.0
C A:VAL44 4.8 53.3 1.0
CA A:GLN43 4.9 51.9 1.0

Reference:

M.Tanada, A.Ohta. Human K-Ras G12D (Gdp-Bound) in Complex with Cyclic Peptide Inhibitor AP8784 To Be Published.
Page generated: Mon Aug 12 02:22:55 2024

Last articles

Cl in 2UWP
Cl in 2UWO
Cl in 2UWN
Cl in 2UWL
Cl in 2UVN
Cl in 2UW9
Cl in 2UWD
Cl in 2UW8
Cl in 2UW7
Cl in 2UW6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy