Iodine in PDB 8a25: Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment

Enzymatic activity of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment

All present enzymatic activity of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment:
2.3.1.43;

Protein crystallography data

The structure of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment, PDB code: 8a25 was solved by M.G.Diwo, W.Blankenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.22 / 1.73
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.238, 82.238, 68.447, 90, 90, 120
R / Rfree (%) 15.8 / 18.3

Iodine Binding Sites:

The binding sites of Iodine atom in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment (pdb code 8a25). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment, PDB code: 8a25:

Iodine binding site 1 out of 1 in 8a25

Go back to Iodine Binding Sites List in 8a25
Iodine binding site 1 out of 1 in the Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Lysophospholipase Plaa From Legionella Pneumophila Str. Corby - Complex with Peg Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I405

b:37.5
occ:0.35
 H A:ARG103 2.5 28.5 1.0
H A:SER90 2.7 43.5 1.0
HG13 A:VAL89 2.9 40.7 1.0
HB3 A:LEU102 2.9 30.3 1.0
HA A:VAL89 2.9 34.5 1.0
HB A:THR101 3.0 30.3 1.0
HB2 A:ARG103 3.1 33.5 1.0
O A:HOH563 3.1 29.1 1.0
N A:ARG103 3.3 23.7 1.0
N A:SER90 3.5 36.2 1.0
H A:LEU102 3.6 27.0 1.0
HB3 A:ARG103 3.7 33.5 1.0
HB3 A:SER90 3.7 53.1 1.0
HG22 A:VAL89 3.7 50.2 1.0
CB A:ARG103 3.8 27.9 1.0
CA A:VAL89 3.8 28.7 1.0
CG1 A:VAL89 3.8 33.9 1.0
CB A:LEU102 3.8 25.2 1.0
N A:LEU102 3.9 22.5 1.0
CB A:THR101 3.9 25.4 1.0
HA3 A:GLY149 3.9 32.9 1.0
CA A:ARG103 4.1 25.9 1.0
C A:VAL89 4.2 33.3 1.0
HB2 A:SER90 4.2 53.1 1.0
HD23 A:LEU102 4.2 27.5 1.0
CA A:LEU102 4.2 21.2 1.0
CB A:VAL89 4.2 29.1 1.0
C A:LEU102 4.2 24.4 1.0
CB A:SER90 4.3 44.2 1.0
HG12 A:VAL89 4.3 40.7 1.0
HG11 A:VAL89 4.3 40.7 1.0
HB2 A:LEU102 4.4 30.3 1.0
HG1 A:THR101 4.4 33.8 1.0
O A:GLY88 4.4 26.0 1.0
CG2 A:VAL89 4.4 41.8 1.0
HA2 A:GLY149 4.5 32.9 1.0
HA A:ARG103 4.5 31.1 1.0
OG1 A:THR101 4.5 28.2 1.0
CA A:SER90 4.5 38.0 1.0
HG A:LEU102 4.6 27.3 1.0
C A:THR101 4.6 27.5 1.0
HG22 A:THR101 4.6 39.7 1.0
CA A:GLY149 4.6 27.4 1.0
HG21 A:THR101 4.7 39.7 1.0
CG2 A:THR101 4.7 33.1 1.0
CG A:LEU102 4.7 22.7 1.0
CA A:THR101 4.7 23.5 1.0
HA A:THR101 4.7 28.1 1.0
HG A:SER153 4.8 42.8 1.0
O A:GLY149 4.9 26.1 1.0
CD2 A:LEU102 4.9 22.9 1.0
N A:VAL89 4.9 28.7 1.0
HG21 A:VAL89 5.0 50.2 1.0
C A:GLY149 5.0 27.1 1.0

Reference:

M.Hiller, M.G.Diwo, C.Lang, S.Wamp, W.Blankenfeldt, A.Flieger. Structure-Function Relationship Underpins Disulfide Loop Cleavage-Dependent Activation of Legionella Pneumophila Lysophosholipase A Plaa and Affects Bacterial Cell Integrity To Be Published.
Page generated: Thu Jul 27 17:43:57 2023

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