Iodine in PDB 8ate: Galacturonic Acid Oxidase From Citrus Sinensis

The structure of Galacturonic Acid Oxidase From Citrus Sinensis, PDB code: 8ate was solved by A.Boverio, S.Savino, M.W.Fraaije, N.Loncar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.03 / 1.92
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.653, 101.653, 108.746, 90, 90, 120
R / Rfree (%)	20.5 / 24.4

The structure of Galacturonic Acid Oxidase From Citrus Sinensis also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Sodium	(Na)	2 atoms

The binding sites of Iodine atom in the Galacturonic Acid Oxidase From Citrus Sinensis (pdb code 8ate). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Galacturonic Acid Oxidase From Citrus Sinensis, PDB code: 8ate:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in the Galacturonic Acid Oxidase From Citrus Sinensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Galacturonic Acid Oxidase From Citrus Sinensis within 5.0Å range: probe atom residue distance (Å) B Occ A:I604 b:54.1 occ:1.00 N A:ARG484 4.2 42.2 1.0 CB A:ARG484 4.3 49.9 1.0 CB A:ASN483 4.4 49.8 1.0 CA A:ARG484 4.4 49.8 1.0 C A:ASN483 4.6 45.2 1.0 O A:HOH779 4.8 46.2 1.0

Iodine binding site 2 out of 2 in the Galacturonic Acid Oxidase From Citrus Sinensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Galacturonic Acid Oxidase From Citrus Sinensis within 5.0Å range: probe atom residue distance (Å) B Occ A:I605 b:47.3 occ:1.00 NH2 A:ARG371 2.6 63.1 1.0 O A:HOH734 3.4 51.4 1.0 CZ A:ARG371 3.9 55.1 1.0 CD A:LYS370 3.9 75.6 1.0 NZ A:LYS370 3.9 76.0 1.0 CA A:PHE367 4.1 44.8 1.0 CD1 A:PHE367 4.2 43.1 1.0 CB A:LYS370 4.5 57.3 1.0 CB A:PHE367 4.6 44.6 1.0 NH1 A:ARG371 4.6 49.7 1.0 CE A:LYS370 4.6 79.7 1.0 NE A:ARG371 4.7 57.1 1.0 N A:PHE367 4.8 46.0 1.0 CG A:LYS370 4.8 60.4 1.0 CG A:PHE367 4.8 42.2 1.0 O A:PHE367 4.9 39.2 1.0

A.Boverio, S.Savino, M.W.Fraaije, N.Loncar. Glucuronic Acid Oxidase From Citrus Sinensis To Be Published.