Iodine in PDB 8d00: Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain

The structure of Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain, PDB code: 8d00 was solved by K.C.Slep, D.L.Bolhuis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.36 / 2.80
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	72.843, 78.456, 131.938, 90, 90, 90
R / Rfree (%)	21.4 / 25.9

The binding sites of Iodine atom in the Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain (pdb code 8d00). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain, PDB code: 8d00:

Iodine binding site 1 out of 1 in the Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of the Arabidopsis Thaliana SPIRAL2 Tog Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:I401 b:79.7 occ:1.00 OG1 A:THR69 3.2 59.3 1.0 OG A:SER49 3.4 63.2 1.0 NZ A:LYS45 3.5 74.8 1.0 O A:ASP65 3.7 65.5 1.0 CD A:LYS45 3.8 75.4 1.0 CG A:LYS45 3.8 72.9 1.0 O A:LYS45 3.8 55.9 1.0 C A:ASP65 3.8 67.1 1.0 CB A:SER49 3.9 59.6 1.0 CD2 A:LEU66 3.9 58.6 1.0 CB A:ASP65 4.1 71.2 1.0 CB A:THR69 4.1 58.7 1.0 CE A:LYS45 4.1 80.2 1.0 N A:LEU66 4.1 66.3 1.0 C A:LYS45 4.1 58.3 1.0 CA A:LEU66 4.2 64.3 1.0 CA A:ILE46 4.2 56.1 1.0 N A:ILE46 4.3 56.9 1.0 CB A:LYS45 4.5 57.5 1.0 CA A:ASP65 4.6 71.0 1.0 CG A:LEU66 4.6 58.2 1.0 CG1 A:ILE46 4.6 55.0 1.0 CG2 A:THR69 4.7 56.0 1.0 CA A:LYS45 4.9 58.2 1.0 CB A:LEU66 5.0 59.4 1.0

Y.Fan, N.Bilkey, D.L.Bolhuis, K.C.Slep, R.Dixit. A Structurally Divergent Tog Domain Stabilizes Microtubule Minus Ends in Arabidopsis Plant Cell 2023.
ISSN: ESSN 1532-298X