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Iodine in PDB 8d0o: Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative

Enzymatic activity of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative

All present enzymatic activity of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative:
2.4.1.152;

Protein crystallography data

The structure of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative, PDB code: 8d0o was solved by R.Kadirvelraj, Z.A.Wood, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.90 / 2.10
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 127.12, 127.12, 127.12, 90, 90, 90
R / Rfree (%) 16.4 / 20.9

Other elements in 8d0o:

The structure of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative also contains other interesting chemical elements:

Caesium (Cs) 9 atoms

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iodine atom in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative (pdb code 8d0o). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 14 binding sites of Iodine where determined in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative, PDB code: 8d0o:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 14 in 8d0o

Go back to Iodine Binding Sites List in 8d0o
Iodine binding site 1 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I401

b:22.9
occ:0.60
 N A:SER273 3.7 13.0 1.0
CB A:PRO272 3.8 16.9 1.0
OG A:SER273 4.0 14.6 1.0
CA A:LYS250 4.1 19.0 1.0
CB A:LYS250 4.1 23.5 1.0
CB A:ASN276 4.2 15.0 1.0
CA A:PRO272 4.2 18.0 1.0
CB A:SER273 4.3 14.0 1.0
O A:HOH530 4.3 31.0 1.0
C A:PRO272 4.5 13.5 1.0
N A:LYS250 4.5 20.1 1.0
CG A:LYS250 4.6 24.2 1.0
CG A:ASN276 4.6 21.8 1.0
OD1 A:ASN276 4.6 24.0 1.0
CA A:SER273 4.6 13.5 1.0

Iodine binding site 2 out of 14 in 8d0o

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Iodine binding site 2 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I402

b:32.3
occ:0.40
 OH A:TYR241 3.5 23.2 1.0
ND2 A:ASN259 3.8 16.3 1.0
CD2 A:LEU231 3.8 21.8 1.0
CA A:LYS256 4.0 31.0 1.0
CG A:LYS256 4.1 31.6 1.0
CE2 A:TYR241 4.1 19.2 1.0
CZ A:TYR241 4.2 18.0 1.0
CB A:LYS256 4.5 32.3 1.0
CG A:LEU231 4.5 22.7 1.0
CB A:ASN259 4.5 11.4 1.0
CD1 A:LEU231 4.5 19.2 1.0
CG A:ASN259 4.7 17.4 1.0
OE2 A:GLU255 4.7 31.0 1.0
CD1 A:ILE235 4.7 15.1 1.0
O A:LYS256 4.7 36.4 1.0
N A:LYS256 4.7 24.2 1.0
CG A:GLU255 4.8 16.6 1.0
O A:GLU255 4.8 30.1 1.0
C A:LYS256 4.9 33.9 1.0
O A:VAL192 5.0 21.3 1.0

Iodine binding site 3 out of 14 in 8d0o

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Iodine binding site 3 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I403

b:32.3
occ:0.30
 ND2 A:ASN308 3.9 29.6 1.0
CB A:LEU311 4.1 16.9 1.0
CD A:LYS310 4.3 38.6 1.0
CG A:LYS310 4.4 34.2 1.0
N A:LEU311 4.4 17.9 1.0
CA A:LEU311 4.4 16.7 1.0
CE A:LYS310 4.5 35.3 1.0
OD1 A:ASN308 4.5 22.0 1.0
CG A:ASN308 4.6 25.5 1.0
CD1 A:LEU311 4.8 15.7 1.0
CB A:LYS310 4.8 21.4 1.0
CG A:LEU311 5.0 15.9 1.0

Iodine binding site 4 out of 14 in 8d0o

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Iodine binding site 4 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I404

b:27.6
occ:0.40
 O A:HOH522 3.3 14.8 1.0
CB A:ASP161 4.1 15.3 1.0
NZ A:LYS250 4.1 42.7 1.0
CE A:LYS250 4.2 32.3 1.0
N A:ASP161 4.2 12.4 1.0
CB A:ARG160 4.3 11.8 1.0
CA A:ASP161 4.5 12.9 1.0
O A:HOH575 4.6 23.4 1.0
C A:ARG160 4.6 18.9 1.0
O A:HOH622 4.6 28.4 1.0
CG A:ARG160 4.7 11.6 1.0
O A:HOH691 4.7 22.2 1.0
CG A:ASP161 4.7 16.1 1.0
CD A:ARG160 4.9 12.0 1.0

Iodine binding site 5 out of 14 in 8d0o

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Iodine binding site 5 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I405

b:34.6
occ:0.20
 CD2 A:PHE178 4.1 37.3 1.0
ND2 A:ASN176 4.2 42.2 1.0
CE2 A:PHE178 4.3 31.9 1.0
OD1 A:ASN176 4.8 34.3 1.0
CG A:ASN176 5.0 39.7 1.0

Iodine binding site 6 out of 14 in 8d0o

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Iodine binding site 6 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I406

b:23.2
occ:0.50
 ND2 A:ASN207 3.6 20.6 1.0
O A:HOH602 3.9 25.0 1.0
CB A:PRO198 4.1 40.2 1.0
O A:HOH516 4.5 27.1 1.0
CG A:PRO198 4.5 40.8 1.0
CG A:ASN207 4.7 19.4 1.0
CA A:PRO198 4.8 37.0 1.0
CG1 A:VAL203 4.8 21.4 1.0
OD1 A:ASN207 4.9 19.8 1.0

Iodine binding site 7 out of 14 in 8d0o

Go back to Iodine Binding Sites List in 8d0o
Iodine binding site 7 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I407

b:32.6
occ:0.30
 N A:PHE329 3.6 14.6 1.0
NE A:ARG328 3.8 28.4 1.0
CA A:ARG328 4.1 15.8 1.0
O A:PHE329 4.2 16.3 1.0
CD A:ARG328 4.3 24.5 1.0
C A:ARG328 4.3 19.9 1.0
CD1 A:PHE329 4.4 19.4 1.0
CA A:PHE329 4.5 14.9 1.0
CB A:PHE329 4.5 15.5 1.0
O A:PRO327 4.5 13.6 1.0
O A:HOH529 4.5 33.1 1.0
CB A:ARG328 4.7 19.6 1.0
C A:PHE329 4.7 15.1 1.0
CZ A:ARG328 4.8 31.2 1.0
O A:HOH661 4.8 45.7 1.0
NH2 A:ARG328 4.9 27.4 1.0
CG A:PHE329 5.0 16.0 1.0

Iodine binding site 8 out of 14 in 8d0o

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Iodine binding site 8 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I408

b:32.5
occ:0.30
 N A:GLN144 3.5 20.1 1.0
CA A:PRO143 3.7 27.5 1.0
CB A:PRO143 3.9 30.7 1.0
C A:PRO143 4.1 24.6 1.0
CS A:CS422 4.3 25.0 0.3
O A:GLN144 4.5 25.4 1.0
CA A:GLN144 4.5 26.3 1.0
CG A:GLN144 4.5 32.6 1.0
CB A:GLN144 4.5 30.7 1.0
C A:GLN144 5.0 28.3 1.0

Iodine binding site 9 out of 14 in 8d0o

Go back to Iodine Binding Sites List in 8d0o
Iodine binding site 9 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I409

b:21.6
occ:0.50
 NE2 A:GLN89 3.5 55.3 1.0
CG A:GLN89 3.6 37.9 1.0
CA A:ASN87 3.7 23.2 1.0
CB A:ASN87 3.9 23.7 1.0
C A:ASN87 3.9 22.9 1.0
CD A:GLN89 4.1 51.2 1.0
O A:ASN87 4.1 19.8 1.0
CB A:GLN83 4.4 19.6 1.0
ND2 A:ASN87 4.4 33.1 1.0
CG A:GLN83 4.4 19.4 1.0
CA A:GLN83 4.6 18.6 1.0
O A:GLN83 4.6 19.8 1.0
OE1 A:GLN83 4.6 22.6 1.0
N A:ILE88 4.7 17.7 1.0
CG A:ASN87 4.7 36.2 1.0
CB A:GLN89 4.8 27.0 1.0
N A:ASN87 4.9 22.7 1.0
C A:GLN83 5.0 19.0 1.0

Iodine binding site 10 out of 14 in 8d0o

Go back to Iodine Binding Sites List in 8d0o
Iodine binding site 10 out of 14 in the Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Human ALPHA1,3-Fucosyltransferase FUT9, Heavy Atom Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I410

b:31.4
occ:0.30
 N A:PHE180 3.5 39.6 1.0
CD A:LYS320 3.6 43.2 1.0
CG1 A:VAL179 3.7 34.4 1.0
O A:ARG319 3.8 20.7 1.0
NZ A:LYS320 3.9 36.6 1.0
CA A:VAL179 4.0 36.6 1.0
C A:ARG319 4.1 19.0 1.0
CE A:LYS320 4.2 43.1 1.0
CA A:LYS320 4.3 21.2 1.0
N A:LYS320 4.3 19.4 1.0
C A:VAL179 4.3 40.0 1.0
CB A:PHE180 4.3 44.3 1.0
O A:HOH614 4.4 36.8 1.0
CB A:VAL179 4.4 36.9 1.0
CA A:PHE180 4.5 39.0 1.0
CB A:ARG319 4.5 22.7 1.0
CG A:LYS320 4.8 36.6 1.0
O A:HOH607 4.9 40.1 1.0
O A:PHE180 4.9 42.4 1.0
CG2 A:VAL179 4.9 40.7 1.0
CB A:LYS320 5.0 31.4 1.0
CA A:ARG319 5.0 21.4 1.0

Reference:

R.Kadirvelraj, Z.A.Wood. Structural Basis For Lewis Antigen Synthesis By the ALPHA1,3-Fucosyltransferase, FUT9 To Be Published.
Page generated: Mon Aug 12 02:36:47 2024

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