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Iodine in PDB 8d22: Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson, PDB code: 8d22 was solved by A.Mrozek, H.W.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.75 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.277, 84.277, 292.195, 90, 90, 120
R / Rfree (%) 19.7 / 23.1

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson (pdb code 8d22). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson, PDB code: 8d22:

Iodine binding site 1 out of 1 in 8d22

Go back to Iodine Binding Sites List in 8d22
Iodine binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Plasmodium Falciparum GRP78-Nbd in Complex with Piclidenoson within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I501

b:190.1
occ:1.00
I A:Q8L501 0.0 190.1 1.0
C14 A:Q8L501 2.1 108.8 1.0
C15 A:Q8L501 3.0 100.6 1.0
C13 A:Q8L501 3.0 89.8 1.0
NH1 A:ARG383 3.0 43.7 1.0
CZ A:ARG383 4.2 49.8 1.0
O A:ARG364 4.2 28.1 1.0
C16 A:Q8L501 4.3 84.5 1.0
C12 A:Q8L501 4.4 66.0 1.0
O A:SER297 4.4 30.9 1.0
NH2 A:ARG383 4.6 59.0 1.0
CB A:ARG364 4.8 28.3 1.0
C17 A:Q8L501 4.9 73.2 1.0
CG A:ARG364 4.9 34.9 1.0
CA A:ARG364 5.0 28.9 1.0

Reference:

A.Mrozek, H.W.Park. Targeting Plasmodium Falciparum GRP78-Nbd: Nucleoside Analogues As Agents Against the Malaria Chaperone To Be Published.
Page generated: Mon Aug 12 02:36:51 2024

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